KEGG   Ottowia sp. oral taxon 894: ADJ79_03060
Entry
ADJ79_03060       CDS       T04031                                 
Name
(GenBank) RNA helicase
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
Organism
oto  Ottowia sp. oral taxon 894
Pathway
oto03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:oto00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    ADJ79_03060
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:oto03019]
    ADJ79_03060
Enzymes [BR:oto01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     ADJ79_03060
Messenger RNA biogenesis [BR:oto03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     ADJ79_03060
SSDB
Motif
Pfam: DEAD Helicase_C ResIII HI1480 P-loop_SecA Utp25_C
Other DBs
NCBI-ProteinID: AKU66470
LinkDB
Position
complement(709445..711160)
AA seq 571 aa
MNFEDLKLAPAIVQAVQEQGYTAPTPIQEQAIPAVLAGHDLLAGAQTGTGKTAGFTLPML
HRLSESATAPAKGAPRPIRALVLAPTRELAAQVEESVRAYGKHLKLKSAVIFGGVGMNPQ
IERIKKGIDILVATPGRLLDLAGQGHVDLSAVEILVLDEADRMLDMGFIHDVKKVLALLP
EQKQSLLFSATFSDDIRALAASLLKNPLSIQVTPPNTTVERIRQVIYPVGRARKKEVLAH
LISQNNWSQVLVFTRTKYGANHVAEYLTKHGIKAMALHGNKSQSARTQALADFKSGELRA
LVATDIAARGIDIDELPHVVNYEIPNVPEDYVHRIGRTGRAGASGEAASLVCMDEEGFMH
EIEKFTRQQIPVQILEGFGPEEGEKAEPIAMGRQTLWGGLGKPPGREVMQAAARAARQEM
MQRIRDNKAALAQRKSAAKPAQSFAAKAAEDASPAEGAENSGEQAAAPAAAGKPAPGKSR
NRYRNRNRRSGESRSAQPRPKADRPARDSDDDDDRLPRHINPLQTNLHGRRNNNGPSHGA
PGQPDPMRTSIDMMSRGKKRRDGGDGFKGYR
NT seq 1716 nt   +upstreamnt  +downstreamnt
atgaactttgaagatctgaaactggcgccggccattgtgcaggccgtgcaagaacagggc
tacaccgcccctactcccattcaggaacaagccattcccgccgtgctggcggggcacgat
ttgctcgctggcgcgcaaaccggcacgggcaaaaccgcaggctttacgctgcccatgctg
catcgcctgtccgaatcggccaccgcgccagccaaaggcgcgccccggcccatccgcgcc
ctggtgctggcccccacgcgggagctggccgcgcaggttgaggaatccgtgcgcgcttac
ggcaagcatctcaagctcaaatccgccgtcatttttggcggcgtgggcatgaacccgcag
atcgagcgcatcaaaaaaggcatcgacattctcgtggccacgccgggccgcctgctggat
ctggcggggcaagggcatgtcgatttgtccgccgttgaaattctggtgctggacgaagcc
gaccgcatgctggacatgggcttcattcacgacgtgaaaaaagtcctggccctgctgccc
gagcaaaaacagagcttgctgttttccgccaccttcagcgatgacatccgcgccctggcg
gccagcctgctcaaaaacccgctcagcatccaggtcaccccgcccaacaccacggttgaa
cgcatccgccaggtcatctaccctgtgggccgcgcgcgcaaaaaagaagtgctggcccac
ctcatcagccaaaacaactggagccaggtgctggtattcacccgcaccaaatacggtgcc
aaccacgtggccgaatacctgacgaaacacggcatcaaggccatggccctgcacggcaac
aagagtcaaagcgcgcgcacccaggcgctggccgatttcaaaagcggcgaactgcgcgcc
ctggtcgccaccgacattgccgcgcgcggcattgatattgacgagctgccgcacgtcgtc
aattacgaaatccccaacgtgcccgaagactacgtgcaccgcataggccgcacgggccgc
gcaggcgccagcggcgaagccgccagcctggtgtgcatggacgaagaaggcttcatgcac
gaaatcgagaaattcacccgccagcagattccggtgcaaattcttgaaggcttcggccct
gaagaaggcgaaaaagccgaacccattgccatgggccgccaaaccctctggggcggcctg
ggcaagccccccggccgcgaagtcatgcaagccgccgcccgcgctgcgcggcaagaaatg
atgcagcgcatccgtgacaacaaggccgccctggcccagcgcaaatctgcggccaagccg
gcccaatccttcgctgccaaagcagccgaagacgccagcccagccgagggcgcggaaaac
tccggcgaacaggccgcagcgccagcagccgcaggcaagcctgcgcctggcaaaagccgc
aaccgctaccgcaatcgcaaccgccgcagcggcgaaagccgcagcgcccagccgcgcccc
aaggcggatcgccccgcgcgcgacagcgacgatgacgacgaccgcctgccgcgccacatc
aacccccttcagaccaatctgcacggccgccgcaacaacaatggccccagccacggtgcg
cccggccagcccgaccccatgcgcaccagtatcgacatgatgagccgtggcaaaaagcgc
cgtgacggcggcgacggcttcaagggctaccgctga

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