Ottowia sp. oral taxon 894: ADJ79_03060
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Entry
ADJ79_03060 CDS
T04031
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
oto
Ottowia sp. oral taxon 894
Pathway
oto03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oto00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ADJ79_03060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oto03019
]
ADJ79_03060
Enzymes [BR:
oto01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ADJ79_03060
Messenger RNA biogenesis [BR:
oto03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ADJ79_03060
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HI1480
P-loop_SecA
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
AKU66470
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All DBs
Position
complement(709445..711160)
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AA seq
571 aa
AA seq
DB search
MNFEDLKLAPAIVQAVQEQGYTAPTPIQEQAIPAVLAGHDLLAGAQTGTGKTAGFTLPML
HRLSESATAPAKGAPRPIRALVLAPTRELAAQVEESVRAYGKHLKLKSAVIFGGVGMNPQ
IERIKKGIDILVATPGRLLDLAGQGHVDLSAVEILVLDEADRMLDMGFIHDVKKVLALLP
EQKQSLLFSATFSDDIRALAASLLKNPLSIQVTPPNTTVERIRQVIYPVGRARKKEVLAH
LISQNNWSQVLVFTRTKYGANHVAEYLTKHGIKAMALHGNKSQSARTQALADFKSGELRA
LVATDIAARGIDIDELPHVVNYEIPNVPEDYVHRIGRTGRAGASGEAASLVCMDEEGFMH
EIEKFTRQQIPVQILEGFGPEEGEKAEPIAMGRQTLWGGLGKPPGREVMQAAARAARQEM
MQRIRDNKAALAQRKSAAKPAQSFAAKAAEDASPAEGAENSGEQAAAPAAAGKPAPGKSR
NRYRNRNRRSGESRSAQPRPKADRPARDSDDDDDRLPRHINPLQTNLHGRRNNNGPSHGA
PGQPDPMRTSIDMMSRGKKRRDGGDGFKGYR
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atgaactttgaagatctgaaactggcgccggccattgtgcaggccgtgcaagaacagggc
tacaccgcccctactcccattcaggaacaagccattcccgccgtgctggcggggcacgat
ttgctcgctggcgcgcaaaccggcacgggcaaaaccgcaggctttacgctgcccatgctg
catcgcctgtccgaatcggccaccgcgccagccaaaggcgcgccccggcccatccgcgcc
ctggtgctggcccccacgcgggagctggccgcgcaggttgaggaatccgtgcgcgcttac
ggcaagcatctcaagctcaaatccgccgtcatttttggcggcgtgggcatgaacccgcag
atcgagcgcatcaaaaaaggcatcgacattctcgtggccacgccgggccgcctgctggat
ctggcggggcaagggcatgtcgatttgtccgccgttgaaattctggtgctggacgaagcc
gaccgcatgctggacatgggcttcattcacgacgtgaaaaaagtcctggccctgctgccc
gagcaaaaacagagcttgctgttttccgccaccttcagcgatgacatccgcgccctggcg
gccagcctgctcaaaaacccgctcagcatccaggtcaccccgcccaacaccacggttgaa
cgcatccgccaggtcatctaccctgtgggccgcgcgcgcaaaaaagaagtgctggcccac
ctcatcagccaaaacaactggagccaggtgctggtattcacccgcaccaaatacggtgcc
aaccacgtggccgaatacctgacgaaacacggcatcaaggccatggccctgcacggcaac
aagagtcaaagcgcgcgcacccaggcgctggccgatttcaaaagcggcgaactgcgcgcc
ctggtcgccaccgacattgccgcgcgcggcattgatattgacgagctgccgcacgtcgtc
aattacgaaatccccaacgtgcccgaagactacgtgcaccgcataggccgcacgggccgc
gcaggcgccagcggcgaagccgccagcctggtgtgcatggacgaagaaggcttcatgcac
gaaatcgagaaattcacccgccagcagattccggtgcaaattcttgaaggcttcggccct
gaagaaggcgaaaaagccgaacccattgccatgggccgccaaaccctctggggcggcctg
ggcaagccccccggccgcgaagtcatgcaagccgccgcccgcgctgcgcggcaagaaatg
atgcagcgcatccgtgacaacaaggccgccctggcccagcgcaaatctgcggccaagccg
gcccaatccttcgctgccaaagcagccgaagacgccagcccagccgagggcgcggaaaac
tccggcgaacaggccgcagcgccagcagccgcaggcaagcctgcgcctggcaaaagccgc
aaccgctaccgcaatcgcaaccgccgcagcggcgaaagccgcagcgcccagccgcgcccc
aaggcggatcgccccgcgcgcgacagcgacgatgacgacgaccgcctgccgcgccacatc
aacccccttcagaccaatctgcacggccgccgcaacaacaatggccccagccacggtgcg
cccggccagcccgaccccatgcgcaccagtatcgacatgatgagccgtggcaaaaagcgc
cgtgacggcggcgacggcttcaagggctaccgctga
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