Ottowia sp. oral taxon 894: ADJ79_10010
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Entry
ADJ79_10010 CDS
T04031
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
oto
Ottowia sp. oral taxon 894
Pathway
oto03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oto00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ADJ79_10010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oto03019
]
ADJ79_10010
03400 DNA repair and recombination proteins [BR:
oto03400
]
ADJ79_10010
Enzymes [BR:
oto01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ADJ79_10010
Messenger RNA biogenesis [BR:
oto03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ADJ79_10010
DNA repair and recombination proteins [BR:
oto03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ADJ79_10010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
Caudo_TAP
Motif
Other DBs
NCBI-ProteinID:
AKU67468
LinkDB
All DBs
Position
complement(2268505..2270448)
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AA seq
647 aa
AA seq
DB search
MPAVQAPADILREVFGYASFRGQQQDIIEHVTGGGDALVLMPTGGGKSLCYQIPAIARQR
AGRGVTLVISPLIALMQDQVDALHEAGVAASFLNSTQDWRETQAVERQLLAGHITLLYAA
PERVTTPRFLELLDALHARGQLGLFAIDEAHCVSQWGHDFRPEYRALTLLHERWPGVPRI
ALTATADALTRADIIERLRLQGARQFVSSFDRPNIRYTIVEKKDPARQLLQFIEREHAGE
AGVVYCQSRKRVEDMAATLNAHGITALPYHAGLPAAERQHNQSRFLREDGIVMCATIAFG
MGIDKPDVRFVAHIDMPKNIEGYYQETGRAGRDGEPADAWMAYGLQDVVNQRRMIDESPA
EESFRQVMRGKLDALLALAEATDCRRARLLAYFGEEMAPRPRSTTKKIAAGADSTRTNGH
FDHWCGNCDNCLNPPQVWDATDCARKLLSTIYRVQQMSGISFGAGHIMDILRGKQTDKVA
QFGHQQISTFGIGSEYSEAQLRSVLRQLIALGALQVDAASYNTLRLLEPARPILRGEQPV
HLRAAASAKKETRKRQAPAHKAPAPAAAELDAAAQARFAALKAWRAETAREHNLPAYVIF
HDATLAAIAARAPQALQDLQGVSGIGATKLERYGQAVLDACLAASAH
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atgcccgcagttcaggccccggcagacatcctgcgcgaagtcttcggctacgccagcttc
cgggggcagcagcaggacatcatcgaacacgtcacgggcggcggcgacgcgctggtgctc
atgcccacgggcggcggcaaatcgctgtgctaccagattccggccatcgcccgccagcgg
gccgggcgcggcgtcacgctggtcatctcgccgctcatcgccctcatgcaagaccaggtg
gacgcgctgcacgaagcgggcgtggccgccagcttcctcaattccacgcaagactggcgc
gagacccaggccgtggagcggcagctgctggcggggcacatcacgctgctttacgccgcg
cccgagcgcgtgaccacgccgcgctttctggagctgctggatgcgctgcacgcgcgcggg
cagctgggccttttcgccatcgacgaagcgcactgcgtgagccagtgggggcacgacttc
cgccccgaataccgggcgctgacgctgctgcacgaacgctggcccggcgtgccgcgcatt
gccctcaccgccacggctgacgcgctcacgcgcgccgacatcatcgagcggctgcggctg
caaggcgcgcggcagttcgtgagcagctttgaccggcccaacatccgctacaccatcgtc
gagaaaaaagaccccgcacggcagctgctgcaattcatcgaacgcgaacacgcgggcgaa
gcgggcgtggtgtattgccagtcacgcaagcgcgtggaagacatggccgccacgctgaac
gcccacggcatcaccgccctgccctaccacgccggcctgcccgccgccgagcgccagcac
aaccaaagccgctttttgcgcgaagacggcatcgtcatgtgcgccaccatcgcctttggc
atgggcattgacaaaccggacgtgcgctttgtcgcccatatagacatgcccaaaaacatc
gagggctactaccaggaaacgggccgcgccggccgtgacggcgaacccgccgacgcctgg
atggcctacggcctgcaagacgtggtgaaccagcgccgcatgattgatgaaagcccggcc
gaagaaagcttccggcaggtgatgcgcggcaagctcgatgccctgctggccctggccgaa
gctaccgactgccgccgcgcccgcctgctggcctactttggcgaggaaatggcgcccagg
ccccgtagcactaccaaaaaaatagctgccggcgcagattccactaggacaaacggccat
tttgaccactggtgcggcaactgcgacaactgcctgaatccgccccaggtgtgggacgcc
accgactgcgcccgcaagctgctgtccaccatctaccgcgtgcagcagatgagcggcatc
agctttggcgcggggcacatcatggacatcctgcgcggcaagcagacagacaaggtcgcg
caattcggccatcagcaaatctccactttcggcatcggcagcgaatacagcgaagcgcag
ctgcgcagcgtgctgcgccagctcatcgccctgggcgcgctgcaagtagacgccgcttcc
tacaacaccttgcgcctgctggagcctgcccgccccatcctgcgcggcgagcagcccgtg
catttgcgggccgccgccagcgccaaaaaagaaacccgcaagcgccaggcgcccgctcac
aaagcgcccgcgcccgccgctgccgagctggacgccgctgcccaggcgcgctttgccgct
ctcaaggcctggcgcgccgaaaccgcccgcgagcacaacctgcccgcctacgtcatcttt
cacgacgccaccctggccgccatcgccgcccgcgccccgcaagcgctgcaagacctgcaa
ggcgtcagcggcatcggcgccaccaaactggagcgatacgggcaggctgtgctcgacgcc
tgcctggccgcttccgctcactga
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