Ottowia sp. oral taxon 894: ADJ79_10680
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Entry
ADJ79_10680 CDS
T04031
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
oto
Ottowia sp. oral taxon 894
Brite
KEGG Orthology (KO) [BR:
oto00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oto03019
]
ADJ79_10680
Enzymes [BR:
oto01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
ADJ79_10680
Messenger RNA biogenesis [BR:
oto03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
ADJ79_10680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_22
HA2_N
NACHT
T2SSE
nSTAND3
AAA_19
AAA_23
FtsK_SpoIIIE
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AKU67570
LinkDB
All DBs
Position
2409602..2413765
Genome browser
AA seq
1387 aa
AA seq
DB search
MNAPASPASASSRPVIAFPPELPVSARRAEIEAALQKHQVIIVCGETGSGKTTQLPKMAL
ALGRGRLNAQAGGRGRLIGHTQPRRIAATSVARRIADELQTPLGEVVGYKVRFSDRLSPG
ASVKLMTDGILLAETQTDPLLKAYDTLIIDEAHERSLNIDFLLGYLKQILPRRPDLKLIV
TSATIDAERFARHFADASGQSAPVLMVSGRTYPVEQRWRPFEESRDYGLNDAIASAVDEL
WTGQPSGDVLVFLPGEREIREAADHLRQHLSHSPLTRGAEVLPLFARLSQAEQDRVFAPH
TAPRIVLATNVAETSLTVPGIKYVVDAGTARVKRYSLRSKVEQLLVEPVSQAAANQRAGR
CGRVSNGVCIRLYDEKDFAGRPRFTDPEILRSSLAAVILRMKALRLGGEGGRVEDFPFLD
APSGRAIADGFALLAELGAMDEAQALTPLGRELARLPLDPRVGRMLIEARERGALREVLV
IAAALSVQDVRDRPLQAQAQADQAHAKFDDDKSEFSGYLRLWQWLQDAREGRAASSRRSM
PAQEDEKGESGRATAAQRAAQALAQARRMLQKQEQKNESAPGQNADFMPETAPVHPPAHR
LSNRQWEALLRQNYISVRRVREWRDIHTQLRTVAAEHQWRENTRPASYEALHKSLLAGLL
GNVGCKLEEGQHGHAGSHGGEQYLGARGIKFHRHPGARLRKKPGKWIVCAELVETTRLYG
RGIAGIEPQWLEEMGGHLLKKQLAEPHWEKKAQDVIAFERATLYGLTVYSGRRKSYAQAD
PREAREIFIREALVHGMAERNVPDDWPRRLPFLQANARTIAQVQELEHKSRRQDVLVDDE
LIYAFYDAHVPEGISNGRDFEKWWRQASQANPRLLTLTREELMRHEAAGITTAAFPKMLR
LGGVDCAAAYLHQPGDARDGLTVTAPLFVLNQISEARCEWLVPGMLKEKIQALLKSLPQK
PRSRFVPLPESAARLAEKLGAPDAFGHGSLTDALLQIVRSETGLDVKRTDFKLDMLPAHL
FMNVRVVDEHGRQLGAGRNLAALKAELGGQARGAFQALAGLKAAKAELNADAAPANPAET
PQAPQTPAQPARAALKTEAGSDAASQRHTRWSFGELPELMEISRKGQTLIGFPALVDAGD
AVTIEVFDEPQVAAARHRTGLRRLFALQIRDALKYLEKNIPDLQKMAVLYMPLGTEGQLR
QQIIDLALDRAFLMEPLPASEAAFAARVEEGRARLTLIANEIARLAAHILTEHAQAARKV
KDAAKAAPEAAKDAAEQLQRLLPPDFITATPWSALQHYPRYLKAVQLRFDKRRADPARDT
RHMQDVRAQEQRFGRLVAERKGQQDERMQELRWLLEELRVSFFAQELRTPQPVSLKRLEK
VWAQVGR
NT seq
4164 nt
NT seq
+upstream
nt +downstream
nt
atgaatgcccctgcctcgcccgcttcagcttcttcgcgccccgtcatcgcctttccgccg
gagctgcctgtttcggcccgccgcgcggaaatcgaggcggcgctgcaaaagcatcaggtc
atcatcgtttgcggcgaaaccggttcgggcaaaaccacgcagctgcccaagatggcgctg
gcgctggggcgcggcaggctgaacgcccaggcgggcgggcgcgggcggctgattggccac
acgcagccgcgccgcatcgcagccaccagcgtggcccggcgcattgccgatgagctgcaa
acgccgctgggcgaagtggtgggctacaaggtgcgtttcagcgaccggctctcgcccggc
gcgagcgtgaagctgatgaccgacggcatcttgctggccgaaacgcagaccgacccgctg
ctcaaggcttacgacacgctcatcatcgacgaagcccacgagcgcagcctgaacattgac
tttttgctgggctacctcaagcaaatcctgccccggcggcctgatctgaaactcatcgtc
acctccgccacgattgacgccgagcgctttgcccgccactttgccgacgccagcggccaa
agcgcgccggtgctgatggtttcgggccgcacgtacccggtggagcagcgctggcggccc
tttgaagaaagccgcgattacggcctgaacgacgccattgccagcgcggtcgatgagctt
tggacgggccagccttcgggcgatgtgctggtgtttctgcccggcgagcgcgaaatccgc
gaagcggccgaccacttgcgccagcacttgtcgcacagcccgctcacgcgcggcgcggag
gtgctgccgctttttgcgcgcctgagccaggccgagcaagaccgcgtgttcgccccgcac
acggccccgcgcatcgtgctggcgaccaatgtggccgaaacctcgctgacggtgcccggc
atcaaatacgtggtggacgcgggcacggcgcgcgtcaagcgctacagcttgcgcagcaag
gtggagcagctgctggtggagccagtcagccaggcagcggccaaccagcgcgcgggccgc
tgcgggcgcgtgagcaacggcgtgtgcatacgcctgtatgacgaaaaagacttcgcgggc
cgcccgcgctttaccgaccccgaaatcctgcgcagctcgctggccgccgtcatcttgcgc
atgaaggcgctgcgcctgggcggcgaaggcgggcgggtggaagactttccgtttctcgac
gcgccctcgggccgcgccattgccgacggctttgccctgctggccgagctgggcgcgatg
gacgaagcgcaagccctcaccccgctgggccgcgaactggcccgcctgccgctggacccg
cgcgtgggccgcatgctgattgaagcgcgcgagcgcggcgcgctgcgcgaagtgctggtg
attgccgccgccttgagcgtgcaagacgtgcgcgaccgccctttgcaggcgcaagcccag
gccgaccaggcgcacgccaagtttgacgacgacaaaagcgaattcagcggctacctgcgc
ctgtggcagtggctgcaagacgcgcgcgaagggcgcgccgccagctcgcggcgctccatg
ccggcgcaagaagacgaaaaaggcgaaagcgggcgcgcaacagccgcccagcgcgccgcg
caagcgctggcgcaagcgcggcggatgctccagaaacaagagcagaaaaacgagtctgca
ccaggacaaaacgccgatttcatgcctgaaacagcgccggtccatccgcctgcccaccgc
ctcagcaaccgccagtgggaagccttgctgcggcaaaactacatcagcgtgcgccgcgtg
cgcgagtggcgcgacatccacacccagctgcgcaccgtggccgccgagcaccaatggcgc
gaaaacacccgccccgccagctacgaggccctgcacaaaagcctgctggccggcctgctg
ggcaacgtgggctgcaagctggaagaagggcagcacggccacgccggaagccacggcggc
gagcaatacctgggcgcgcgcggcatcaagtttcaccgccaccccggcgcgcgcctgcgc
aaaaagcccggcaaatggatcgtctgcgccgagctggtggaaaccacgcgcctgtatggc
cggggcatcgccggcatcgagccgcagtggctggaggaaatgggcggccacctgctcaaa
aagcagctggcggagccgcactgggagaaaaaagcgcaagacgtcatcgccttcgagcgc
gccacgctctacggcctgacggtctacagcggccgccgcaaaagctacgcccaggccgac
ccgcgcgaggcgcgcgaaatcttcatccgcgaagcgctggtgcacggcatggccgagcgc
aacgtgcccgacgactggccgcgccgcctgccctttttgcaggccaacgcccgcaccatc
gcccaagtgcaggagctggagcacaaaagccgccggcaagacgtgctggtcgatgacgaa
ctcatctacgccttctacgacgcgcacgtgcccgaaggcatcagcaacgggcgcgacttt
gaaaagtggtggcgccaagccagccaggccaacccccggctgctgacgctcacccgcgaa
gaactcatgcgccacgaagcggcgggcatcaccaccgccgcctttcccaaaatgctgcgg
ctgggcggcgtggactgcgccgccgcctacctgcaccagccgggcgacgcgcgcgacggc
ctcaccgtcaccgcgccgctgttcgtgctcaaccaaatcagcgaagcgcgctgcgaatgg
ctcgtgcccggcatgctgaaagaaaaaatccaggccctgctcaaaagcctgccgcaaaag
ccccgcagccgcttcgtgcccctgcccgaaagcgccgcgcggctggctgaaaaactgggc
gcgcccgacgccttcggccacggcagcctgaccgacgcgctgctgcaaatcgtgcgcagc
gaaaccgggctggatgtcaaacgcaccgacttcaagctcgacatgctgcccgcgcacctg
ttcatgaatgtgcgcgtggtagacgaacacggccgccagctgggcgcgggccgcaacctc
gccgccctcaaggccgaactgggcggccaggcgcgcggcgcttttcaggcgctggccggc
ctgaaagccgccaaggcggaactcaacgccgacgcggcccccgccaacccggcagaaaca
ccccaagcgccgcaaacgcccgcccagccagcgcgggctgcgctcaaaaccgaagctggc
agcgacgccgccagccagcgccacacccgctggagctttggcgagctgcccgagctgatg
gaaatttcccgcaaaggccagacgctcatcggctttcccgcgctggtggacgcgggcgac
gccgtcaccatcgaagtctttgacgagccgcaagtggccgccgcgcgccaccgcaccgga
ttgcggcggcttttcgccctgcaaatccgcgacgcgctcaaatacctcgaaaaaaacatt
cccgatctgcaaaaaatggccgtgctctacatgccgctgggcaccgaagggcagctgcgc
cagcaaatcatcgacctggcgctggaccgcgcctttctgatggagccgctgcccgccagc
gaagccgcctttgccgcccgcgtggaagaaggccgcgcgcgcctgaccctcatcgccaac
gaaatcgcgcgcctggccgcccacatcctgaccgaacacgcccaggccgcccgcaaagtg
aaagacgccgccaaagccgcccccgaagcggccaaagacgccgccgagcaattgcagcgc
ctgctgccgcccgacttcatcaccgccacgccctggagcgcccttcagcactacccgcgc
tacctcaaagccgtgcaactgcgctttgacaaacgccgcgccgaccctgcccgcgacacc
cggcacatgcaagacgtgcgcgcgcaagagcagcgctttgggcgcctggtggccgagcgc
aaaggccagcaagacgaacgcatgcaagagctgcgctggctgcttgaagagctgcgcgtg
agctttttcgcccaggagctgcgcacgccccagcccgtgagcctcaagcgcctggaaaaa
gtctgggcgcaggtggggcgctga
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