Oryzomicrobium terrae: OTERR_14140
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Entry
OTERR_14140 CDS
T06190
Symbol
mfd
Name
(GenBank) transcription-repair coupling protein
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
otr
Oryzomicrobium terrae
Pathway
otr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
otr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OTERR_14140 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
otr03400
]
OTERR_14140 (mfd)
Enzymes [BR:
otr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OTERR_14140 (mfd)
DNA repair and recombination proteins [BR:
otr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
OTERR_14140 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
MFD_D3
ResIII
SNF2-rel_dom
UB2H
Cas3-like_C_2
Glyco_tran_WecG
AroM
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QEL64890
UniProt:
A0A5C1E7I6
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All DBs
Position
complement(1557609..1561055)
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AA seq
1148 aa
AA seq
DB search
MAAALPARLPAPGERTDAPSLPGSADALYLAAAATRIKRPLAVVTASAQDAQRLLDEIPW
FAPGLRVKLLPDWETLPYDNFSPHHDLVSERLATLWALYKGEFDVVLVPASTAVVRLAPP
AFLAAYTFHFKKGEQLDAEAFRAQVTLAGYTNVTQVVSPGEYSIRGGLIDLFPMGSPLPY
RIDLFDDEIETLRAFDADSQRSLYPVPEVQLLPAREFPMDDRGRTLFRQRFREVFEGDPA
KSGVYKDISNGIPSAGIEYYLPLFFEEGDAATLFDYLPKDALFCLHGAVDEAIRDFARDT
QSRYNLLQGDKARPLLPPETLFLNEEAFFVAAKNYGRLALRPAVSAAAELAASLPAVAVD
RRAEDPLTALKAFTGGFAGRVLLLAESAGRRETLNEMFAEHGLKPAASADLAAFASPGAP
QLALGVGPLQSGFIVGAGSDALAFVTETELYAGSPRRAKRAAQKKASLDNWLKDLTELKV
GDPVVHEQHGIGRYLGLVTLDLGEGNTEFLHLEYANDAKLYVPVSQLHVISRYSGADPDA
APVHTLGSGQWEKAKRRAAEQARDTAAELLALYAARAARQGHAFAFKASDYDAFADGFGF
EETPDQAAAIAAVIDDMKSGKPMDRLVCGDVGFGKTEVALRAAFVAVAGNKQVAVLCPTT
LLCEQHYQTFCDRFADWPVKIAEISRFKTAKETAQAVKDLAEGKIDILIGTHKLIQQDVK
FPNLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLAMSLEGLRDFSAIATA
PQKRLAIKTFVSKFSDGIIREAVLREFKRGGQVYFLHNEVDTIDNMREKLTKLLPEARIA
VGHGQMPERDLERVMRDFTQGRANLLLCTTIIETGIDISNANTILINRAEKFGLAQLHQL
RGRVGRSHHQAYAYLLVFDEKALTKQAKQRLEAIQMMEELGSGFYLAMHDLEIRGAGEVL
GENQSGEMQEVGFNLYTEMLNRAVAALKQGREPDLAQPLGVATEINLHVPALLPNDYCPD
VHERLSLYKRLANCEADDEIGALQEELVDRFGELPAQAQSLLATHRLRLLAKPLCVQKLD
ATREQVTVQFSPEFSKNPPIEPIKIINLIQTDRNYKLAGQDKLALSRSCPTLADRVAAVK
DLFKKLTA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggccctgccggcgcgcctgcccgcccccggcgagcgtaccgatgccccctcc
ttgcccggctccgccgacgccctttacctggcggcggcagccacccgcatcaagcgcccc
ctggcggtggtcacggcctcggcccaggacgcccagcgcctgctcgacgaaatcccctgg
ttcgccccggggctgcgggtcaaactgctgccggactgggaaaccctgccctacgacaac
ttctcgccccaccacgacctggtgtccgagcgtctggccaccctgtgggcgctgtacaag
ggcgagttcgacgtggtgctggtacccgcctccaccgctgtggtgcggttggccccgccg
gccttcctggcggcctataccttccacttcaagaagggtgagcagctcgacgccgaggcc
ttccgcgcccaggtcaccctggccggctacaccaacgtcacccaggtggtctccccgggc
gaatactcgatccgcggcgggctgatcgacctgttcccgatgggctcgccgctgccctac
cggatcgacctgttcgacgacgagatcgagaccctgcgcgccttcgacgccgattcccag
cgcagcctctacccggtgcccgaggtgcagctgctgccggcccgggaatttcccatggac
gaccgagggcgcacgctgtttcgccagcgcttccgcgaggtgttcgagggcgacccggcc
aagtccggggtctacaaggacatctccaacggcatcccctcggcgggcatcgagtactac
ctgcccctgttcttcgaggaaggcgacgccgccaccctgttcgactacctgcccaaggac
gccctgttctgcctgcacggcgcggtggacgaagccatccgcgacttcgcccgggacacc
cagtcgcgctacaacctcctccagggggacaaggcccgccccctgctgccgccggaaacg
cttttcctcaacgaggaggcgttctttgtcgctgcaaaaaactacgggcggctggccctg
cgcccggcagtcagtgccgcggcagaactggcggcatccctgccagccgtagcggtggac
cgccgcgccgaggatccgcttaccgccctgaaggcgtttaccggcggctttgccgggcgg
gtgctgctgctggccgaatccgccggccggcgtgaaaccctcaacgagatgttcgccgag
cacggcctcaagccggcggccagtgccgatctggcggcctttgccagcccgggggcaccc
caactggccctgggggtcggccctctgcaatcgggtttcatcgttggtgcaggcagcgac
gccctggctttcgtcaccgagaccgagctgtacgccggcagcccgcgccgcgccaaacgg
gcagcgcaaaagaaagccagcctggacaactggctgaaggacctgaccgagctcaaggtc
ggcgacccggtggtgcacgagcagcacggcatcggccgctacctgggcctggtgaccctg
gacctgggggaaggcaacaccgagttcctgcacctggaatacgccaacgacgccaagctg
tacgtgccggtgtcccagttgcacgtcatctcccgctactccggcgccgacccggacgcc
gccccggtgcacaccctgggttcgggccagtgggaaaaagccaagcgccgcgccgccgag
caggcccgcgacaccgccgctgaactgctcgcgctgtacgccgcccgggccgcccgccag
ggtcatgccttcgccttcaaggccagcgactacgacgccttcgccgacggtttcggcttc
gaggaaaccccggaccaggccgccgccatcgccgcggtgatcgacgatatgaagtcgggc
aagcccatggaccggctggtgtgcggcgacgtgggcttcggcaagaccgaggtggccctg
cgcgccgccttcgtggccgtggccggcaacaagcaggtggcggtgctgtgccccaccacc
ctgctctgcgagcagcactaccagaccttctgcgaccgtttcgccgattggccggtgaag
atcgccgagatttcccgcttcaagaccgccaaggaaaccgcccaggcggtgaaggatctg
gccgagggcaagatcgacatcctgatcggcacccacaagctgatccagcaggacgtgaag
ttccccaacctggggttggtcatcatcgacgaggaacaccgcttcggcgtgcgccagaag
gaggccctgaaggccctgcgcgccgaggttgacgtgctgaccctgaccgccacgccgatc
ccacgcaccctggccatgagcctggaagggctgcgggacttctcggccatcgccacggcg
ccgcagaagcgccttgcgatcaagaccttcgtctccaagttctccgacggcatcatccgc
gaggcggtgctgcgcgaattcaagcgcggcggccaggtgtacttcctgcacaacgaggtc
gacaccatcgacaacatgcgcgagaagctgaccaagctgctgccggaagcgcgcatcgcc
gtgggccacggccagatgccggagcgagacctggaacgggtgatgcgcgacttcacccag
ggccgggccaacctgctgctgtgcaccaccatcatcgagaccggcatcgacatttcgaac
gccaacaccatcctcatcaaccgggccgaaaagttcggcctggcccaactgcaccagctg
cgcggccgggtcggccgctcccaccaccaggcctacgcctacctgctggtattcgacgaa
aaggccctgaccaaacaagccaagcagcgcctcgaagcgatccagatgatggaggagctg
ggctcgggcttctacctggccatgcacgacctggaaatccgtggcgctggcgaggtgctg
ggcgagaaccagtccggcgagatgcaggaggtgggtttcaacctgtacaccgagatgctc
aaccgggcggtggcggccttgaagcagggtcgcgagccggacctggcccagcccctgggg
gtggccaccgaaatcaacctgcacgtgccggccctgctgcccaacgactactgcccggac
gtgcacgagcgcctgtcgctgtacaagcgcctggccaactgcgaggccgacgacgagatc
ggcgccctccaggaagaactggtggaccgtttcggcgaactgcccgcccaggcccagtcg
ctgctcgccacccaccgcctgcgcctgctcgccaagcccctgtgcgtgcaaaagctcgat
gccacccgggaacaggtgacggtgcagttcagcccggaattttcgaagaatccgcccatc
gagccgatcaagatcatcaacctcatccagaccgaccggaactacaagctggccggacag
gataaactcgctctttcccgctcctgcccgacccttgccgaccgagtggccgcggtaaag
gacctgttcaagaaactgaccgcctga
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