Oryzomicrobium terrae: OTERR_18690
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Entry
OTERR_18690 CDS
T06190
Symbol
rnr
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
otr
Oryzomicrobium terrae
Pathway
otr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
otr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OTERR_18690 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otr03019
]
OTERR_18690 (rnr)
03016 Transfer RNA biogenesis [BR:
otr03016
]
OTERR_18690 (rnr)
Enzymes [BR:
otr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
OTERR_18690 (rnr)
Messenger RNA biogenesis [BR:
otr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
OTERR_18690 (rnr)
Transfer RNA biogenesis [BR:
otr03016
]
Prokaryotic type
tRNA degradation factors
OTERR_18690 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
QEL65345
UniProt:
A0A5C1E9I5
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All DBs
Position
complement(2089767..2093036)
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AA seq
1089 aa
AA seq
DB search
MSTPKLSKVRRSDPFFEREVQKYPSPLPSREYITLTLEEQGRPVSVEHLCALLDIAPFER
DLFERRLRAMEREGEVLRNRKGALILPEKVDLIPGRVMGHADGFGFLIPDDQSDDLYLEP
KQMDRVLHGDRALARVAGVDRRGRREGVIVEVLERANTLLVGRVFEEHGVRFVVPENRRI
NQKILLAPAEKGETGKKGKKRGGVAVVQPGQVVVVEIIEQPTRYTQPIGRVKEVLGNYAD
PGMEIEIALRKHDLPFDFSPEAEAETKAIPDTVRKVDTAGREDLTHLPLVTIDGETARDF
DDAVYAEKVGRGYRLVVAIADVSHYVKPGMALDHDAFSRGNSVYFPRRVIPMLPEKLSNG
LCSLNPDVIRLSMVCDMQITSAGRIKSYRFYPAVFRSRARLTYTQVWNWISGAAQPEADA
HVAVFPHLQTLYKLFQVLSKARDQRAAIDFETTETQMIFNDQGKIDTIVPVVRNDAHKLI
EECMLAANVCAANFLEEHKQTCLYRVHQGPTPEKLEALRDFLKEFGLSIGGGDAPGARDY
AELLDKVKDRPDAPLLQTVMLRSLRQAIYSPDNLGHFGLAYEAYTHFTSPIRRYPDLLVH
RAIKAVLSGQRYKPEGYQDLILIPEKPLKRNGAQSRPAEVKTAKALPAEAPKDKDHANWE
SIGLHCSATERRADEATRDVENWLKCFYMKERIGEVFDGTISTVVPFGIFVALDEVYVEG
LVHVSELGEDYFHHDPVKHAMVGERTKVSYRLGGRVKVKLVRADMESGKIDFALVKDGAA
AGKGARAVEAATPDKMGKKPHHTARHEPQPASGFAKREDGRTSRRDKAAGKKGASSSHRG
AEHYAAKSAPGSHRHQERTSKKTFPAKAAPMRDEDRPTTYFGPPEGVANAAVPSVPAATS
RRRKAPVAALLGGVPLPLVEVAQAPVEALPKKKQSATGKPVKTVKSAKATKATKASQATQ
AAGTGAGKKTAATVKKAPAKAAAVKRKPTKSAPAADKAAAPATVEQAVAPKTSAKKKPAA
KPAATTKAPKRAKAAAPVVEGASKTVATPTTATKATGKTANKSATGKTAAGAATAKPVKT
GASKASKGG
NT seq
3270 nt
NT seq
+upstream
nt +downstream
nt
gtgtcaacaccaaaattgtcgaaagttcgccgcagcgatccgttttttgagcgcgaggta
caaaagtacccgtcgccgctgccctcccgggaatacatcaccctgaccctggaagaacaa
ggcagacccgtcagcgtcgagcatctgtgcgccttgctcgatatcgctcccttcgagcgc
gatctgttcgagcgacgcctgcgtgccatggagcgggaaggggaagtcctgcgcaaccgc
aagggcgccctgatcctgccggaaaaagtggatctgattcccggtcgggtgatgggccat
gccgacggtttcggctttctgattccggacgaccagtccgacgacctgtacctcgaaccc
aagcagatggaccgggtactgcacggcgaccgtgcactggcgcgggtggctggagtggac
cggcgcgggcggcgcgaaggggtcatcgtcgaggtgctggagcgggccaataccctgcta
gtggggcgcgtcttcgaggagcacggcgtgcgcttcgtcgtgccggagaaccggcgcatc
aaccagaaaatcctgctggctcccgccgaaaagggtgaaaccggcaaaaagggcaagaag
cgtggtggcgtggccgtggtccagcccggtcaggtggtggtggtcgagatcatcgagcag
ccgacccgctacacccagcccatcggccgggtgaaggaggtgctgggcaactacgccgac
ccaggcatggagatcgagatcgccctgcgcaagcacgatctgcccttcgatttctcgccg
gaagccgaggccgagaccaaggccattccggacacggtgcgcaaggtcgataccgccggc
cgcgaggacctgacccacctgcccctggtgaccatcgacggtgaaaccgcccgggacttc
gacgacgcggtttatgccgaaaaggtcggccgggggtaccgcctggtggtggccatcgcc
gacgtctcccactacgtcaagccgggtatggccctggaccacgacgccttctcccggggc
aactcggtctatttcccgcgccgggtgatcccgatgctgccggaaaagctttccaacggc
ttgtgctccctcaacccggacgtgatccgcctgtccatggtctgcgacatgcagatcacc
agtgccggccgtatcaagagctaccgtttctacccggcggtgttccgttcccgggcccgc
ctcacctacacccaggtgtggaactggatctccggcgccgcgcagcccgaagccgatgca
cacgtggcggtctttcctcacctgcaaaccctctacaagctgttccaggtgctctccaag
gcccgggatcagcgggcggccatcgatttcgagaccaccgagacccagatgatcttcaac
gatcaaggcaagatcgacacgatcgtgccggtggtccgcaacgatgctcacaaactgatc
gaggaatgcatgctggcggccaacgtctgtgccgccaatttcctcgaagagcacaagcag
acctgcctgtaccgggtgcaccagggcccgacgccggaaaagctcgaagccctgcgcgac
ttcctcaaggaattcggtctgtccatcggcggcggcgatgccccgggggcccgggactat
gccgaactgctcgacaaggtgaaggaccggcccgacgcaccgctgctgcagacggtgatg
ctgcgctccctgcgccaggccatctacagcccggacaacctgggccacttcggcctggcc
tacgaggcctacacccatttcacctcgccgatccgtcgctacccggacctgctggtgcac
cgggcgatcaaggcggtgctgtccggtcagcgctacaagcccgagggctaccaggacctg
attctgattccggaaaagcccctcaagcgtaacggcgcccagtcgcgcccggccgaggtc
aagaccgccaaggccctgccggcggaggcccccaaggacaaggatcacgccaactgggaa
tccatcggcctgcactgctcggccaccgagcggcgtgccgacgaggctacccgggatgtg
gagaactggctgaagtgcttctacatgaaggagcgcatcggcgaggtgttcgacggcacc
atttccaccgtggtgcccttcggcatcttcgtcgccctggacgaggtgtacgtcgaaggc
ctggtgcatgtttccgagctcggggaggactacttccaccacgacccggtcaagcatgcc
atggtcggtgagcggaccaaggtcagttatcgcctcggcggccgggtcaaggtcaagctg
gtgcgtgccgacatggagagcggcaagatcgatttcgccctggtcaaggacggtgcggct
gcaggcaagggggcgcgggctgtcgaggccgcgacaccggacaaaatgggcaagaaaccc
catcatactgccaggcacgagccccagccggcttccggcttcgccaagcgcgaggatggg
cgcacctcccgccgtgacaaggctgccggcaagaagggggcttcctcgtcgcaccggggg
gcggaacactacgctgccaagagtgccccgggcagccatcgccaccaggagcgcacgagc
aagaaaaccttcccggccaaggccgctccgatgcgcgacgaggatcgtccgacgacttac
ttcggaccgcctgaaggcgtggccaacgccgccgttcctagcgttcccgccgccacgtcg
aggcggcgcaaggcacccgtagcggctttgctgggcggtgttcccttgccgctggtcgag
gtcgcccaggctcccgtggaagcgctgccgaagaagaagcaaagcgcgaccggcaagccc
gtgaaaacggtgaaatcggctaaagcgaccaaagcaacgaaagccagccaagcgacccag
gccgccggtaccggtgcaggcaaaaaaacggcagcaacggtgaaaaaagcgccggcaaag
gccgcggcggtcaagcgtaagccgaccaagagcgcccctgccgcggacaaagcggcggct
ccggccacggtggaacaagcggtggcgcccaagaccagtgcgaagaaaaaaccagctgcc
aaaccggcggcgaccacgaaggctcccaagcgcgccaaggccgcggcccccgtggttgaa
ggcgcaagcaagacggtggcaacacccacgacggccaccaaggctaccggcaaaacggcg
aacaagagcgcaacgggcaagactgccgccggtgccgccaccgccaaacccgtcaagacc
ggggcaagcaaagccagcaaagggggctga
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