Oryzomicrobium terrae: OTERR_20550
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Entry
OTERR_20550 CDS
T06190
Symbol
rho
Name
(GenBank) transcription termination factor
KO
K03628
transcription termination factor Rho
Organism
otr
Oryzomicrobium terrae
Pathway
otr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
otr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OTERR_20550 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
otr03021
]
OTERR_20550 (rho)
03019 Messenger RNA biogenesis [BR:
otr03019
]
OTERR_20550 (rho)
Transcription machinery [BR:
otr03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
OTERR_20550 (rho)
Messenger RNA biogenesis [BR:
otr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
OTERR_20550 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
AAA_22
OB_RNB
S1CSD-TOTE-2
NACHT
ATPase_2
Phostensin_N
AAA
Mor
Motif
Other DBs
NCBI-ProteinID:
QEL65531
UniProt:
A0A5C1E977
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All DBs
Position
2313696..2314952
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AA seq
418 aa
AA seq
DB search
MHLSELKALHVSQLLEMAAGFGIEGANRLRKQELIFALLRHQAKKGESIFGDGCLEVLPD
GFGFLRSPDISYLAGTDDIYVSPSQIRRFNLHSGDSIEGEIRTPKDGERYFALVKVDKIN
GEDPAVCKSKILFENLTPLHPNQMLRLERENRSDENITSRVIDMISPIGKGQRGLLVAPP
KSGKTVMLQNIAHAITANHPDVVLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPATRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPTSGKVLTGGVDANALQKPKRF
FGAARNIEEGGSLTIIATALIDTGSRMDEVIYEEFKGTGNMEVHLDRRMAEKRIYPAINL
NRSGTRREELLLKQDVLQKVWILRKVLYNMDDLEAMDFLLGKIKQTKNNDEFFDAMRR
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgcatctctccgaactcaaagcgctccatgtgagccagctcctcgaaatggccgccggt
ttcggcatcgaaggcgccaaccggctgcgcaagcaggaactgatcttcgccctgctgcgc
caccaggccaagaagggtgagagcatctttggtgacggctgtctcgaggtgctgcccgac
ggctttggcttcctccgctccccggacatctcctacctggccggcaccgacgacatttac
gtctcgccgtcccagatccgccgcttcaacctgcactccggtgattccatcgagggcgag
atccgcactcccaaggatggcgagcgctacttcgccctggtcaaggtggacaagatcaac
ggtgaggatccggcggtctgcaagagcaagatcctgttcgagaacctgacgccgctgcac
ccgaaccagatgctccgtctggagcgggagaaccgttccgacgagaacatcaccagccgg
gtgatcgacatgatctcccccatcggcaagggccagcgcggcctgctggtggctccgccg
aagtcgggcaaaacggtgatgctgcagaacatcgcccacgccatcaccgccaaccacccg
gatgtggtgctgattgtgctgctgatcgatgaacgtcccgaggaagtgaccgaaatgcag
cgcaccgtgcgtggtgaagtggtcgcctccactttcgacgagccagccacccgccacgtc
caggtcgccgagatggtcatcgagaaggccaagcgcctggtcgagcacaagaaggacgtg
gtcatcctgctcgactccattacccgcctggcccgggcttacaacaccgtggtaccgacc
tccggcaaggtgctcaccggcggtgtggacgccaacgccctgcaaaagcccaagcgcttc
ttcggcgccgcccgcaatatcgaggaaggcggctccctgaccatcatcgccaccgctctg
atcgacaccggctcgcgcatggacgaggtgatctacgaagaattcaagggcaccggcaac
atggaagtgcacctggaccggcgcatggcggaaaaacgtatctacccggccatcaacctc
aaccgctccggcacccgtcgcgaagagctgctgctcaagcaggacgtgctgcaaaaggtg
tggatcctgcgcaaggtcctctacaacatggacgacctggaagccatggacttcctgctc
ggcaagatcaagcagaccaagaacaacgacgagttcttcgacgccatgcgccgctga
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