Oryzomicrobium terrae: OTERR_27530
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Entry
OTERR_27530 CDS
T06190
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta prime
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
otr
Oryzomicrobium terrae
Pathway
otr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
otr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
OTERR_27530 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
otr03021
]
OTERR_27530 (rpoC)
03400 DNA repair and recombination proteins [BR:
otr03400
]
OTERR_27530 (rpoC)
Enzymes [BR:
otr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
OTERR_27530 (rpoC)
Transcription machinery [BR:
otr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
OTERR_27530 (rpoC)
DNA repair and recombination proteins [BR:
otr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
OTERR_27530 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QEL66229
UniProt:
A0A5C1EC89
LinkDB
All DBs
Position
complement(3094359..3098576)
Genome browser
AA seq
1405 aa
AA seq
DB search
MKALLDLFKQVTQEEEFDAITIGLASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAFVVVEAGMTPLQRGQLLTEDDYLAKVEEYGDEFQALM
GAEAVRELLRSIDVDRDVERLRQELETTGSEAKNKKIAKRLKILEGFQKSGIKPDWMVLE
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPDIIVRNEKRMLQ
ESVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQ
LRLHQCGLPKLMALELFKPFIFHKLEVLGLATTIKQAKKMVESQEPVVWDILEDVIREHP
VMLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEA
RTLMLASNNVLSPANGNPIIVPSQDIVLGLYYATRDRINAKGEGMFFADVAEVERAYATN
QVELHTKIAVRLKHYDKTADGGWSERLVRVETTVGRAILSQILPKGLPFKAIDQPLKKKA
ISKLIDESFRRCGLKETVVFADKLMQNGFRLATRGGISFCASDMRVPTQKNEIIGAARDE
VREIEDQYKNGLVTQGERYNKVVDIWGRAGDQVAKVMMDQLSFEETVNRAGAKVKQESFN
SIYMMADSGARGSAAQIKQLAGMRGLMAKPDGSIIEEPIYSNFREGLNVLEYFISTHGAR
KGLADTALKTANSGYLTRRLVDVTQDLVITEDDCGTANGFVMKALIEGGEVIEPLRERIL
GRVTADDLLDPETQQVAISAGALLDEDLCDLIDRLGIDEVKVRTPLTCDTRYGLCAKCYG
RDLGRGSLVNTGESVGVIAAQSIGEPGTQLTMRTFHVGGAASRAAVADNVEAKSNGTVRF
TSTMRYVTSNKGEKVVVGRSGEIIITDDMGRERERHKVPYGAVLQADEGKQVKAGTKLAT
WDPHTRPIITEYSGTAKFENVEEGVTVAKQIDDVTGLSTLVVIDPKRGGKAQSKGLRPQV
KLIDANGDEVKIANSEQSVVISFPVGAIITVTDGLQVGGGEVLARIPQESAKTRDITGGL
PRVAELFEARTPKDAGMLAEVTGTISFGKDTKGKQRLVITDLEGQAHDYLIPKDKHVLVH
DGQVVNKGESIVDGEPDPQDILRLKGVEELARYITDEVQDVYRLQGVKINDKHIEVIVRQ
MLRRVQVTDPGDTGFIRSEQVERSEVLIANDRMMAEGKQPAVFEPVLLGITKASLSTDSF
ISAASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGLAYHRTRKAQSAGDDLA
ADRPLEEEAPAAVETSAGDAPQMDV
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcactgctggatctgttcaaacaggtaacccaggaagaggaattcgacgcgatc
accatcggtctcgcgtcgcccgagaaaattcgttcctggtccttcggcgaagtcaaaaag
ccggaaaccatcaactaccgtaccttcaagcccgaacgggacggtctgttctgcgccaag
atctttggcccgatcaaggactacgagtgcttgtgcggtaagtacaagcgcctcaagcac
cgcggcgtaatctgcgagaagtgcggcgtcgaagtgaccctggccaaggtgcgccgcgag
cgcatgggccacatcgaactggcttcgccggtcgcccacatctggttcctcaagtccctg
cccagccgtctcggcatggtgctggacatgaccttgcgcgacatcgagcgtgtcctctac
ttcgaagcctttgtcgtggtggaagcgggcatgaccccgctgcagcgcggccagctcctc
accgaggacgactacctggccaaggtggaagaatacggtgacgaattccaggccctgatg
ggcgccgaagccgtgcgcgaactgctgcgttcgatcgacgtcgatcgggacgtggagcgt
ctgcgtcaggaattggaaaccaccggttccgaagccaagaacaagaagatcgccaagcgc
ctgaagattctcgaaggcttccagaagtccggcatcaagcccgactggatggtcctcgaa
gtgctgcccgtgctgccgccggacctgcgtccgctggtgcccttggacggtggccgcttc
gccacctccgacctgaacgacctgtatcgccgcgtcatcaaccggaacaaccgtctcaag
cgtctgctcgagttgaaggccccggacatcatcgtgcgcaacgaaaagcgcatgctgcag
gagtccgtggactccctgctcgacaacggccgccgcggcaaggccatgaccggcgccaac
aagcgtccgctcaagtccctggctgacatgatcaagggtaagggcggtcgtttccgtcaa
aacctgctgggtaagcgtgtcgactactccggccgttccgtgatcgtggtgggcccgcag
ttgcgtctgcaccagtgcggcctgcccaagctgatggccctggagttgttcaagcccttc
atcttccacaagctggaagtgctcggcctggccaccaccatcaagcaagccaagaagatg
gtcgaatcccaggaaccggtggtgtgggacatcttggaagacgtgatccgcgaacacccg
gtcatgctcaaccgtgcgccgaccctgcaccgtctgggtatccaggccttcgagccgacc
ctgatcgaaggcaaggccatccagctgcacccgctggtgtgcgcggcgttcaacgccgac
tttgacggcgaccaaatggccgtccacgtgcccctgtccctggaagcccagatggaagcc
cgcaccctgatgctggcctccaacaacgtgctttccccggccaacggcaacccgatcatc
gtgccgtcccaggacatcgtgctgggcctgtactacgctacccgtgaccgcatcaacgcc
aagggcgaaggcatgttcttcgccgacgtggccgaggtggagcgggcctatgcgaccaac
caggtcgaactgcacaccaagatcgccgtgcgcctcaagcactacgacaagactgccgac
ggtggctggtccgagcgtctggtgcgggtcgagaccaccgttggtcgtgccatcctgtcg
cagatcctgccgaagggcctgcccttcaaggccatcgaccagccgctgaagaagaaggcg
atctccaagctgatcgacgaatccttccgccgctgcggcctgaaggaaaccgtggtgttc
gccgacaagctgatgcagaacggcttccggctggctacccgcggtggtatctccttctgc
gccagcgacatgcgtgtgccgacccagaagaacgagatcatcggtgccgcccgtgacgaa
gtacgcgagatcgaggaccagtacaagaacggtctggtgacccagggcgagcgctacaac
aaggtggtggatatctgggggcgtgccggcgaccaggttgccaaggtgatgatggaccag
ctgtccttcgaggaaacggtcaaccgcgctggcgccaaggtgaagcaggagtccttcaac
tccatctacatgatggccgactccggcgcccggggttccgccgcccagatcaagcagctg
gccggtatgcggggcctgatggccaagcctgacggctcgatcatcgaagagccgatttac
tcgaacttccgcgaaggtctgaacgtgctggagtacttcatctccacccacggtgcccgt
aagggtctggccgataccgcgctgaagaccgccaactccggttacctgacccgccgtctg
gtggatgtgacccaggatctggtgatcaccgaggacgattgcggcacggccaacggcttt
gtcatgaaggccctgatcgaaggcggtgaagtgatcgagcccctgcgtgagcgcatcctc
ggccgtgtcaccgccgacgacctgctcgacccggaaacccagcaagtggcgatctctgcc
ggagccctgctcgacgaagatctgtgcgatctgatcgaccgcctcggcatcgacgaagtc
aaggtgcgcaccccgctgacctgcgatacccgctacggtctgtgcgccaagtgctacggc
cgcgatctgggccgcggctccctggtcaataccggcgaatccgtcggcgtcatcgccgcc
cagtcgatcggtgagccgggtacccagctcaccatgcgtaccttccacgtgggtggtgcc
gcctcccgtgccgccgtggccgacaacgtcgaggccaagtccaacggtacggtgcgcttt
acctccaccatgcgctacgtcaccagtaacaagggtgaaaaagtggtggttggtcgttcc
ggcgaaatcatcattaccgatgacatgggtcgtgagcgcgagcgccacaaggtgccttac
ggcgccgtgctgcaggcggacgagggcaagcaggtcaaggccggtaccaagctggcgact
tgggatccccacacccgtcccatcatcaccgagtactccggtaccgccaagttcgagaac
gtggaagagggtgtgaccgtcgccaagcagatcgacgacgtgaccggcctgtccaccctg
gtggtgatcgatccgaagcgcggcggcaaggcccagtccaaggggctgcgtcctcaggtc
aagctgatcgacgccaacggcgacgaagtgaagatcgccaattcggaacagtccgtggtg
atttccttcccggtgggggcgatcatcaccgtgaccgacggtctccaggtcggtggcggt
gaagtgctggcccgtattccccaggaatcggccaagacccgcgacatcaccggtggtctg
ccgcgggtggcggagctgtttgaagctcgcacccccaaagacgccggcatgctggcagag
gttaccggtaccatttccttcggcaaggacaccaagggtaagcagcgcctggtgatcacc
gatctggaaggtcaggcgcacgattacctgatccccaaggacaagcacgtgctggtgcac
gacggtcaggtggtgaacaagggtgaatcgattgtggacggcgaacccgatccccaggac
atcctccgcctcaagggcgttgaagagttggcccgctacatcaccgacgaagtccaggac
gtgtaccgtctgcagggcgtgaagatcaacgacaagcacatcgaggtgatcgtccgtcag
atgctgcgtcgtgttcaggtaaccgacccgggtgataccggcttcatccgcagcgagcag
gtggagcgctccgaagtgctgatcgccaacgaccgcatgatggctgaaggcaagcagccg
gcggtgttcgagccggtactgctgggtatcaccaaggcgtcgctgtctaccgactcgttc
atctcggcggcttccttccaggaaaccacccgggtactcaccgaagccgccatcatgggc
aagcgcgacgaactgcgcggcctcaaggaaaacgtcatcgtcggccgtctcatcccggcc
ggtaccggtcttgcttaccaccgtacccggaaggcccagtccgccggggacgatctggca
gcagaccggcctctcgaagaggaagctcctgcggcggtggaaacctccgctggagacgcg
ccgcagatggatgtatga
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integrated database retrieval system
