Oryzomicrobium terrae: OTERR_28240
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Entry
OTERR_28240 CDS
T06190
Symbol
rnb
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
otr
Oryzomicrobium terrae
Brite
KEGG Orthology (KO) [BR:
otr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
otr03016
]
OTERR_28240 (rnb)
Enzymes [BR:
otr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
OTERR_28240 (rnb)
Transfer RNA biogenesis [BR:
otr03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
OTERR_28240 (rnb)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
T2SSF
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
QEL66300
UniProt:
A0A5C1EBI1
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All DBs
Position
3186240..3188243
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AA seq
667 aa
AA seq
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MFILFEEDGAFKAGSVLADNDTTLQVEAASGKRSKIKAANVLLRFKEPSPTALLGLAESE
AAGIDPEFLWECAGDDEFAFAAFAKDYVGHEPGAVEATAVLLALQAAPIYFHRKGRGRFR
KAPPEILKAALAGAEKKRLQAEAIERMASEIAAGTLPDEFRNQVDALLFKPDRNRPEVKA
LEAAVERSGQSAEALLFAAGAFRSAYELHYKRFLFEQFPQGTGFPEIEIPHAPDDLPRAE
VQAFSIDDAATTEIDDALSVTPLPGIGWRIGIHIAAPGLGFGLGSPLDGVARKRLSTVYM
PGNKITMLPSEVVDRFTLYGGRDCPALSLYLTVSDTWEILSHESRCEVVPIATNLRHQDI
EPLFNAETLASGLAEFPFRDELLTLYHFACACEGRRGKPSATQGVNDYNFEIEGDLDTDP
DGCRVQISERPRGSPLDKLVAELMIVANATWGRLLADLKIPALYRAQVGGKVRMTTSPLP
HEGLGVDCYAWSTSPLRRYVDLINQWQLVAAVSGKPPTFSGKSDVLFAAMRDFELTYAAY
ADFQRGMERYWVIRWLAQEGITALDATVRKENLVRVDRLPGLHRVPSLPELVPGTRVALV
VDKTDPLTLTLDFRFVATLGVTAADSGADLEDDEAEIDDSGDGSSDDSVPGAEPAVEAAL
SQPNEDA
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgtttatcctgtttgaagaagacggcgccttcaaggccggttccgtgctcgccgacaac
gacaccaccctgcaggtggaggcggcctcgggcaagcgttccaagatcaaggccgccaac
gtgctgctgcgcttcaaggagccctcccccacggccctgctcggcctggccgagtctgag
gccgccggcatcgatccggaattcctgtgggaatgcgccggcgacgacgagttcgccttt
gccgcgttcgccaaggactacgtcggccacgagcccggcgcggtggaggccaccgccgtg
ctgctggccttgcaggccgcgccgatctacttccaccgcaagggccgcggccgcttccgc
aaggctccgccggaaatcctcaaggccgccctggccggcgccgagaagaaacgcctgcaa
gccgaggccatcgagcgcatggccagcgagatcgccgccggtaccctgcccgacgagttc
cgcaaccaggtcgacgccctgctcttcaagccggaccgcaaccgccccgaggtgaaggcc
ctggaggctgccgtggagcgcagcggccagtcggccgaggccctgctgttcgccgccggc
gccttccgttccgcctacgagctgcactacaagcgcttcctgttcgagcagttcccgcaa
ggcaccggcttccccgagatcgagatcccccacgccccggacgatctgccccgggccgag
gtgcaggccttctccatcgacgacgccgccaccaccgagatcgacgacgccctgtcggta
acgcccctgcccggcatcggctggcgcatcggcatccacatcgccgccccgggcctgggg
ttcggcctgggctcgcccctcgacggggtggcgcgcaagcgcctgtccacggtgtacatg
ccgggcaacaagatcaccatgctgccgagcgaagtggtggaccgtttcaccctctacggc
ggccgcgactgcccggccctgtcgctgtacctgaccgtctccgatacctgggagatcctc
tcccacgagtcgcgctgcgaggtggtgccgatcgccaccaacctgcgccaccaggacatc
gagcccctgttcaacgccgagaccctggccagcggcctggccgagttccccttccgcgac
gaactgctcaccctctaccacttcgcctgcgcctgcgagggccggcgcggcaagccctcg
gccacccagggcgtcaacgactacaacttcgagatcgagggcgacctggacaccgatccg
gacggttgccgggtacagatcagcgaacgtccccggggcagccccctggacaagctggtg
gccgagttgatgatcgtcgccaacgccacctggggccggctgctggccgacctgaagatt
cccgccctgtaccgggcccaggtcggcggcaaggtgcgcatgaccacctcgcccctgccc
cacgagggcctgggggtggactgctatgcctggagcacctcgccgctgcgccgctacgtg
gacctgatcaaccagtggcagctggtggccgccgtcagcggcaagcccccgaccttctcg
ggcaagtccgacgtgctgtttgccgccatgcgcgacttcgagctgacctacgccgcctac
gccgacttccagcgcggcatggagcgctactgggtgatccgctggctggcccaggaaggc
atcaccgccctggacgccacggtgcgcaaggaaaacctggtgcgggtggaccgcctgccc
ggcctgcaccgggtgccctccctgcccgaactggtgccgggtacccgggtggccctggtg
gtggacaagaccgacccgctcaccctgaccctggatttccgcttcgtcgccaccctgggc
gtcacggccgccgactccggcgccgacctggaggacgacgaggcggagatcgacgacagc
ggcgacggcagcagcgacgacagcgtgcccggcgccgagccggccgtcgaggccgccctg
tcccagcccaacgaggatgcctga
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