KEGG   Oryzomicrobium terrae: OTERR_28710
Entry
OTERR_28710       CDS       T06190                                 
Symbol
polA
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
otr  Oryzomicrobium terrae
Pathway
otr03030  DNA replication
otr03410  Base excision repair
otr03420  Nucleotide excision repair
otr03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:otr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    OTERR_28710 (polA)
   03410 Base excision repair
    OTERR_28710 (polA)
   03420 Nucleotide excision repair
    OTERR_28710 (polA)
   03440 Homologous recombination
    OTERR_28710 (polA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:otr03032]
    OTERR_28710 (polA)
   03400 DNA repair and recombination proteins [BR:otr03400]
    OTERR_28710 (polA)
Enzymes [BR:otr01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     OTERR_28710 (polA)
DNA replication proteins [BR:otr03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     OTERR_28710 (polA)
DNA repair and recombination proteins [BR:otr03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     OTERR_28710 (polA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     OTERR_28710 (polA)
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N DNA_pol_A_exo1 5_3_exonuc DNA_polI_exo1 Obc1_cap
Other DBs
NCBI-ProteinID: QEL66347
UniProt: A0A5C1EDY4
LinkDB
Position
3240153..3242912
AA seq 919 aa
MASLLLVDGSSYLYRAFHALPDLRNAAGEPTGALYGVLSMLRRLEADHKAMAGDATVYRA
CVFDAKGKTFRDDWYPDYKGHRPPMPEDLAAQIPAIHAAIAAAGWPILTIDGVEADDVIG
TLARQAEAADIDVVVSTGDKDLAQLVSPRVTLVNTMSNETLDVAGVEAKFGVPPGLIVDY
LTLIGDTVDNVPGVAKVGPKTAVKWLTQYGNLDGVIAHAGEIGGVVGQNLRDHLDFLPLG
RRLVTVKCDVADLPAVTSLVPRTPDLAALAGMYAHYGFKTWLKEATGEAAGEAGSDARAG
ASAVAASDPAALVADGRHRDGYETILDQAGFERWLARIEAASLVALDTETTSLDPFEARI
VGMSFALAAGEAAYLPLAHCGPDAPVQLDRESALARLKPWLESAAHAKVLQNAKYDQHVF
ANHGIALAGVAHDTMLESYVVEADKGHDLEQLAKRHLGLVGLSYTDLCGKGAKQIGFDQV
AVDQASAYAAEDTDFTLRVHERLYPAIAADAGLTRIYHDIELPSREVLFAMERTGILINS
ARLDAQSHALGKRLLELEQEAQVLAGQPFNLNSPKQLAEILFTKLELPVKKKTPGGTPST
DEEVLSELALDYPLPKLLLEYRSLAKLKGTYTDKLPKMVNPVTGRIHTHFSQATAVTGRL
SSSDPNLQNIPVRTPEGRRIREAFVAPAGHVLVSADYSQIELRIMAHLSEDAGLLAAFAA
GEDVHRATAAEIFGITPLEVTSEQRRYAKTINFGLIYGMSAHGLARSLDIERSAAQTFID
RYFARYPGVARYMEETRARAREQGYVETVFGRRLQLPEIRASQAGRRQGAERAAINAPMQ
GTAADLIKLAMVAVHRWLATEGVKSRLLLQVHDELVLEVPDAELPRIRAELPGLMARVAD
LRVPLVVEVGAGASWEEAH
NT seq 2760 nt   +upstreamnt  +downstreamnt
atggcttctttgctgctcgtcgatggctcgtcgtatctctaccgggccttccatgccctc
cctgacctgcgcaatgcagcgggagagccgacgggtgcgctatacggggtcttgtccatg
ctacgtcggctggaagccgaccacaaggcgatggccggcgatgcaacggtctatcgcgcc
tgcgttttcgatgccaagggcaagacctttcgcgacgactggtacccggattacaagggg
catcgcccccccatgccggaggacctggctgcccagattcccgccatccacgcggccatc
gccgccgccggctggccgatcctgaccatcgacggggtcgaggccgacgacgtcatcggc
accctggcccgccaggccgaggcggccgacatcgacgtggtggtgtccaccggcgacaag
gacctggcccagctggtcagcccccgggtcaccctggtcaacaccatgagcaacgagacc
ctggacgtggccggcgtggaagccaagttcggcgtgccgccgggattgatcgtcgattac
ctgaccctgatcggcgacacggtggacaacgtgcccggcgtggccaaggtcggccccaag
accgcggtgaaatggctgacccagtacggcaatctggacggcgtcatcgcccacgccggc
gagatcggcggcgtggtcgggcagaacctgcgcgaccatctggattttctgcccctgggg
cgccgcctggtaacggtgaagtgcgacgtggccgatctgcccgcggtgaccagcctcgtt
ccccgcaccccggacctggccgccctggccgggatgtatgcccactacggcttcaagacc
tggctcaaggaagccaccggcgaggcggcgggcgaggccggcagcgacgcccgggcggga
gccagcgccgtggccgccagcgaccccgccgccctggtagccgacggccgccaccgggac
ggctacgaaacgatcctcgaccaagccggcttcgagcgctggctggcccgcatcgaggcc
gccagcctggtggccctggacaccgaaaccaccagcctggacccgttcgaagcgcgcatc
gtcggcatgtccttcgccctggccgccggggaggccgcctacctgcccctggcccactgc
ggcccggatgcgccggtccaactcgaccgggagtccgccttggcgcggctcaagccctgg
ctggaatcggccgcccacgccaaggtgctgcagaacgccaagtacgaccagcacgtcttc
gccaaccacggcatcgccctggccggggtggcccacgacaccatgctcgagtcctacgtg
gtggaggccgacaagggccacgacctggagcagctggccaagcgccacctgggcttggtg
ggcctctcctacaccgacctgtgcggcaagggggccaagcagatcggcttcgaccaggtg
gcggtggaccaagcctccgcctatgccgccgaggacaccgacttcaccctgcgggtgcat
gaacggctctatccggccatcgctgccgatgcggggctgacgcgcatctaccacgacatc
gagttgccctcccgggaggtgctgttcgccatggagcgcaccggcatcctcatcaacagc
gcccggctcgacgcccagagccacgccctgggcaagcgcctgctggagctggagcaggag
gcccaggtgctggccggccagcccttcaacctcaattcgcccaagcagctggccgagatc
ctgttcaccaagctcgaactgccggtgaagaagaagaccccgggcggcaccccctccacc
gacgaggaggtgctctcggaactagccctggactaccccctgcccaagctgctgctcgag
taccgcagcctggccaagctcaagggcacctacaccgacaagctaccgaagatggtgaac
ccggtcaccgggcgcatccacacccatttttcccaggccaccgcggtgaccgggcggctg
tcgtcgtcggaccccaacctgcagaacatcccggtgcgcaccccggaagggcggcgcatc
cgcgaggccttcgtcgccccggccggccatgtgctggtgtccgccgactactcccagatc
gagctgcgcatcatggcccacctgtcggaggacgccggcctgctggcggcctttgccgcc
ggggaggacgtgcaccgcgccaccgccgccgagatattcggcatcacgcccctggaagtg
accagcgaacagcgccgctacgccaagaccatcaacttcggcctgatctacggcatgagc
gcccacggcctggcccgctccctggacatcgagcgcagcgccgcccagaccttcatcgac
cgctacttcgcccgctatccgggcgtggcccgctacatggaggaaacccgggcccgggcc
cgggagcagggttatgtcgaaaccgtgttcggccgccgcctgcagctgcccgagatccgc
gccagccaggccggccgtcgccaaggcgccgagcgggcggcgatcaacgcgccgatgcag
ggcaccgccgccgacctgatcaagctggccatggtggccgtgcaccgctggctcgccacc
gaaggtgtaaagagccgcctgctactgcaggttcacgacgaattggtactggaagtgccg
gatgccgagttgccgcgcatccgcgccgaactccccggcctgatggccagggtcgccgac
ctgcgcgtgcccctggtggtggaagtaggggcgggggcgagctgggaagaagcgcactaa

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