Orientia tsutsugamushi Ikeda: OTT_0280
Help
Entry
OTT_0280 CDS
T00705
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ott
Orientia tsutsugamushi Ikeda
Brite
KEGG Orthology (KO) [BR:
ott00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
OTT_0280 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ott03021
]
OTT_0280 (rpoD)
Transcription machinery [BR:
ott03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
OTT_0280 (rpoD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r4
Sigma70_ner
Sigma70_r2
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
BAG39738
UniProt:
B3CQ43
LinkDB
All DBs
Position
282103..283950
Genome browser
AA seq
615 aa
AA seq
DB search
MASLRNKNNKIIICNKKTKKNTNVEELASNFVDESEKLSSKISDSDINLDKDFDYTKLGV
CPDKIEEEEVVLASNATEGEFEEDLDDNIYSTDIVRAYLKDMSNTTLLSREGEIELAKQM
EEGKKTVIHFICHLPYVMKLLIQWYEDLVHSRILVRNLIELESNIYDQPEDDNQHDYDSD
GDCEELQNEPLTKVESEILPKILDKMQVVSDLATQLFEVAAHDFKLHKSSCNYQESKKFT
ELSKELIAAVSNIHFNKQSIKNILNKLYSVNKDIISKEINLLKAAEKYKISRHDFLFQYN
SGSNWLQKVKLLHQDEWNKFLSKEKDLIKSTIDYFSEIEQAMLLPLKRFKEIIQAIQNGE
RKVRVAKKKMVESNTRLVVHVAKPYVNRGLPFLDLIQEGNIGLMKAVDKYNYLLGYKFST
CATWWVRQSISRAVADQARTIRIPVHMADTISKIVRVSKQMHNELGYEPTASEIAEKLSM
PIDKVKKVMRIAKEPVSLENPIGEEDGSCLSDFIEDKNAILPIEEAIKFSLRETTTRALS
TLTAREERVLRLRFGIGLPTDYTLEEVGGEFKVTRERVRQIEAKALRKLKHPVRSKKLKS
FLSSKNKTLSNNEND
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atggcaagtctgcgtaataaaaataataaaattattatctgcaataaaaaaactaaaaaa
aatacaaatgtagaagagttagctagcaatttcgttgatgaatcagaaaaattatcatca
aaaatttctgattctgacattaacttagataaagattttgattatactaaattgggagta
tgtcctgataaaatcgaagaagaagaagtagtattagcttctaatgctactgaaggagaa
tttgaagaagatttagatgataatatatactctacggatattgttagagcatatctaaaa
gatatgagcaacaccactttactttcgagagagggagaaattgaacttgctaagcaaatg
gaagaaggaaaaaaaacagtgatacacttcatttgtcatcttccatatgttatgaaactc
ttaatacagtggtatgaagacttagttcatagtagaatattagtaaggaatcttattgag
ctagaaagtaacatttatgatcagcctgaagatgataaccaacatgactatgattctgat
ggtgattgtgaagaattacaaaatgaacctttaaccaaggtagaatcagaaattttgcct
aaaattcttgataagatgcaagttgtttctgacttagcaactcagctttttgaagttgca
gctcatgattttaaattgcataaatctagctgtaattatcaggaaagtaaaaaatttact
gagttatcaaaagaactaattgctgcagttagtaatattcactttaacaagcagtctatt
aaaaatattttaaacaaattatatagtgttaataaagatataattagtaaagaaattaat
ttgcttaaagctgcggaaaaatataaaataagccgccatgatttcttatttcaatataat
agcggtagtaattggttacagaaagtaaagttattacatcaagatgagtggaataaattt
ttaagcaaggaaaaagaccttattaagtctaccattgattatttcagcgaaattgaacaa
gcaatgttattgcctttaaaaaggtttaaggaaattattcaagctattcaaaatggcgaa
cggaaggttagagtagcaaaaaagaaaatggttgaatctaatacacgtttggtagtacat
gttgctaaaccatatgttaatcgtggattaccatttttagacttaattcaggaaggtaac
atcgggcttatgaaggctgtagataaatacaattatcttcttggatataaattttccact
tgtgctacttggtgggttaggcaatcaattagccgcgctgttgcagatcaagctcgaact
attcgtataccagttcatatggctgataccatcagcaagattgttagagttagcaagcaa
atgcataacgaattaggttatgaacctactgcctctgaaatcgctgagaagttgtcaatg
ccaatagataaggttaaaaaagtaatgagaattgctaaagagccagttagtttagaaaac
cctatcggtgaagaagatggaagttgcttatcagacttcattgaggataaaaacgctata
ttaccaatagaagaagctatcaaatttagtttacgtgagactactacgcgcgctctatca
actcttacagctagagaagaaagagtattaaggctaagatttggtattgggttacctact
gattatacacttgaagaagttggtggcgaatttaaagtaacaagagaaagagttaggcaa
attgaagctaaggctctaagaaaacttaaacatcctgttagatcaaaaaaattaaagagt
tttttaagtagtaaaaataaaactttaagtaataacgagaatgattaa
DBGET
integrated database retrieval system
