Onthophagus taurus (bull-headed dung beetle): 111413339
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Entry
111413339 CDS
T07420
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
otu
Onthophagus taurus (bull-headed dung beetle)
Pathway
otu03013
Nucleocytoplasmic transport
otu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
otu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
111413339
03015 mRNA surveillance pathway
111413339
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otu03019
]
111413339
Enzymes [BR:
otu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
111413339
5.6.2.5 RNA 5'-3' helicase
111413339
Messenger RNA biogenesis [BR:
otu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
111413339
mRNA cycle factors
Common to processing body (P body) and stress granule
111413339
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
NAT10_TcmA_helicase
ATPase
UvrD-helicase
NPHP3_N
AAA_22
nSTAND3
SRP54
AAA_16
nSTAND_NTPase5
AAA_10
DUF7953
AAA_7
AAA_5
YkyA
Motif
Other DBs
NCBI-GeneID:
111413339
NCBI-ProteinID:
XP_022900034
LinkDB
All DBs
Position
10:complement(98319..104928)
Genome browser
AA seq
1108 aa
AA seq
DB search
MSVDAYGPSETLTFLDTEEADLIGADTQGSDCDFTDFTIPSQTQASQLEYNGPQTSGIQV
NGISNKSNTIPGKLPATTNALGELQFEEDDEEFYNSKELPDYACKYCGIHEPNCVVMCNL
CKKWFCNGRGNTSGSHIINHLVRAKHKEVTLHKDGPLGETILECYSCGVRNVFVLGFIPA
KADSVVVLLCRQPCAAQNSLKDMNWDQDQWKPLISDRCFLTWLVKIPSEQEQLRARQITA
QQINKLEELWKENVDATFQDLEKPGVDEEPQQVLLRYEDGYQYQNIFGPLVKLEADYDKR
LKESQTQENIEVRWDVGLNKKTIAYFTLAKTDGDMKLMHGDELRLRYVGEMHKPWSGVGH
VIKVPDNYGEDIGIELKNSAGAPTDCNSNFVVDFIWKSTSFDRMQLALRKFAVDDSSVSP
YIYHRLLGHEVEDVLFRCHLPKHFSAPNLPDLNRSQVYAVKHALQRPLSLIQGPPGTGKT
VTSATIVYQLVKQNGGPVLVCAPSNTAVDQLTEKIHRTSLKVVRLCAKSREAIDSPVSFL
ALHNQIRKMETNTELLKLQQLKDETGELSSVDEKRYRMLKKSAEKELLEAADVICCTCVG
AGDPRLTRLKFHSILIDESMQATEPECMVPVVLGVKQLILVGDHCQLGPVVMCKKAARAG
LSQSLFERLVVLGIRPFRLEVQYRMHPELSRFPSNFFYEGTLQNGVCADDRKLLKIDFPW
PIPERPMFFHVTQGQEEIAGSGTSYLNRTEAANVEKIATRFLKCGVKPEQIGVITPYEGQ
RAYLVQYMQYQGSLHSKLYQEIEIASVDAFQGREKDIIIMSCVRSNEHQGIGFLNDPRRL
NVALTRAKYGIIIVGNPKVLSKQPLWNHLLSFYKEQKVLVEGPLTNLKESLIQFAKPKKL
INSENPGSHFMTTSMFDAREALVPGSIYDRTNTAINGGGQYNYPRGSVPLDMFSRTHDPI
SYISPERAQAAMNNLPVPVGMFMNMAHIPPRFYNQHQQALQARQQTTTTRNRKPIPTRQK
NKAALSQEQTQPFSQSLQLTQGMSQPGLSQPGFSLSQPGLSQAELSQDPYSMADYQSQMD
GLLSQDSTYQGDRSGNFFQPNGQFSQPY
NT seq
3327 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcgacgcgtacggaccatccgagacgctcacgtttctagatactgaggaggca
gacttaattggggcagatacccagggttccgattgtgattttaccgattttactattccc
tcgcaaacgcaagcctcgcaactcgagtataacggaccacaaacgtccggaatacaggtt
aatgggatatccaataaaagtaatacaatacctggtaaattaccagctactacaaatgca
ttgggtgagttgcaattcgaagaggatgatgaagagttttataacagtaaagaactcccg
gattatgcctgtaaatactgtggaattcacgaaccaaattgcgtggttatgtgtaattta
tgtaaaaagtggttttgtaatggacgaggaaacacttctggaagtcacataatcaatcat
ttggttagggcaaaacacaaggaagtgactttacataaagatggtccgttgggtgaaact
atacttgagtgttatagctgtggtgttcgaaatgtttttgtattgggttttattccggcg
aaagctgattctgttgttgttttactttgcagacagccttgcgcagcacagaattcttta
aaggatatgaattgggatcaagatcagtggaaacctctcatttccgatcgctgtttccta
acatggttggtaaaaattccatccgaacaagaacagcttcgtgccagacaaattacagct
caacaaattaataaattggaagaactttggaaagaaaacgttgatgcaacctttcaagat
ttagaaaaacccggggttgacgaagaaccacaacaagttttacttcgttacgaagatggt
tatcaataccaaaatattttcgggccactagttaaattggaagctgattatgataaaaga
ttaaaagagtctcaaacgcaagaaaacattgaggttcgttgggatgttggtttaaacaag
aaaacgattgcgtattttacgttagctaaaacagatggtgacatgaaattaatgcatggg
gatgagttgcggttaagatacgtgggggaaatgcataaaccttggtcgggagttggccat
gttataaaagttccagataattatggtgaagatattggaattgaattaaaaaatagtgct
ggcgctccaactgattgcaacagcaattttgtcgttgattttatttggaaaagcacaagt
tttgatcggatgcaattagctctacgtaaatttgctgttgatgactcatccgtttcccca
tacatttaccatagattactggggcatgaagttgaagatgttttatttcgttgccacctt
cccaaacatttttcagctccaaatctccctgatttgaaccgatcccaagtttacgctgtt
aaacacgcattgcaacgcccgctttcattaatccaaggaccacctggtacaggaaaaacg
gtcacatccgcaacgatcgtttaccaactcgttaaacaaaacggcggcccagttttagtt
tgcgccccaagcaacaccgccgtcgatcaattaaccgaaaagattcatcgtaccagttta
aaagtggttagactgtgcgctaaatccagggaagccatcgactctcccgtcagcttttta
gcgttacataatcaaatcagaaaaatggaaaccaacactgaacttttaaagttacaacaa
ttgaaagatgaaacgggagaattgagttccgtcgatgagaagcgttatagaatgcttaaa
aagtcggcagaaaaagaacttttagaagctgccgacgttatttgttgtacttgtgttggt
gcaggagatccacgtttaaccagattaaaatttcattctattttgattgatgaaagtatg
caggctaccgaacctgaatgtatggtgccagttgttcttggagtaaaacaactaattctg
gttggagatcattgccagttggggccggtggttatgtgcaaaaaagctgcgagagccgga
ttatctcaaagtttattcgaacgcctcgtcgttttgggaatacgtccatttagacttgaa
gtccaatacaggatgcatcccgagttatcccggttcccttcaaatttcttctacgagggt
accttacaaaatggagtttgtgccgacgacaggaaattattaaaaatcgattttccatgg
ccgattcctgaacgtcccatgttcttccatgtaactcaaggtcaagaggaaattgccgga
tctggaacgagttatctaaatcgaacggaagctgcgaatgttgaaaaaattgcaacgaga
tttttgaaatgtggggttaaaccagaacaaattggtgtgattacaccgtatgaaggtcaa
agagcttatttggtacaatacatgcaatatcaagggagtttacatagtaagttgtaccaa
gaaattgaaatcgcaagcgttgatgcgtttcaaggaagagaaaaagatatcattatcatg
tcttgcgtgagaagtaacgaacatcaaggaattgggttcttaaatgatccaagaagatta
aacgtagctttaacaagggctaaatatgggattattatcgttggaaacccaaaagttctt
tcaaaacaaccactttggaatcatttattaagtttttataaagaacaaaaagttttagtt
gaaggccctctaacaaatttaaaagaaagtttgattcaatttgccaaaccaaagaaatta
attaattcggagaaccccggttcacattttatgaccacctcaatgtttgatgctcgtgaa
gctttagttccaggttcaatttacgatcgtacaaatacagcaataaatggtggaggtcaa
tataattatccgcgaggttctgttccgttggatatgtttagtagaacccatgatcccata
agttatatttccccggagcgtgctcaagctgcgatgaataatcttcctgttccggttgga
atgtttatgaatatggctcatattccaccaagattttacaatcaacatcaacaagcttta
caagcaagacaacaaacgacaacaacaagaaatcgtaaacccattccaacgcgtcaaaag
aataaagcagctttaagtcaagaacaaacccaaccatttagtcaatcgctacaattgaca
cagggtatgtcacaaccgggattatcacaacctggttttagtttatctcaaccgggtctc
agtcaggcggagctgagccaagacccatacagtatggccgattatcaatcgcaaatggac
ggactgctgtcgcaagactcaacatatcaaggcgaccggtctggtaactttttccagccg
aacggccaattttcgcagccgtattga
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integrated database retrieval system
