Onthophagus taurus (bull-headed dung beetle): 111413481
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Entry
111413481 CDS
T07420
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
otu
Onthophagus taurus (bull-headed dung beetle)
Pathway
otu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
otu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111413481
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otu03019
]
111413481
03041 Spliceosome [BR:
otu03041
]
111413481
03009 Ribosome biogenesis [BR:
otu03009
]
111413481
03016 Transfer RNA biogenesis [BR:
otu03016
]
111413481
Enzymes [BR:
otu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111413481
Messenger RNA biogenesis [BR:
otu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
111413481
Spliceosome [BR:
otu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
111413481
Complex C
U4/U6.U5 tri-SnRNP related factors
111413481
Ribosome biogenesis [BR:
otu03009
]
Eukaryotic type
Pre-60S particles
Helicases
111413481
Transfer RNA biogenesis [BR:
otu03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
111413481
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
Death_3
Tricorn_C1
ATPase_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
111413481
NCBI-ProteinID:
XP_022900243
LinkDB
All DBs
Position
2:18599551..18610276
Genome browser
AA seq
1047 aa
AA seq
DB search
MAENVDELFECFDEKPTAKRLKTVEVDVDEDKGDGKPASTSKSTVDCGPGSSEGVKREGD
DVENVVIKRTKIEDDLTLDEINFDEFDNRIVVHTIESLESCTHEVAYPPGQTYIPLQPPS
GEPAKTYQFTLDPFQKESILCVDNNQSVLVSAHTSAGKTVVAEYAVATSLRNKQRVIYTT
PIKALSNQKYREFYDEFKDVGLVTGDVTINPSASCLIMTTEILRNMLYRGSEIMREVGWV
IFDEIHYMRDKERGVVWEETLILLPHNVHFVFLSATIPNARQFVEWVTNIHQQPCHVVYT
DYRPTPLQHYIFPSGGQGIHMVVDESGTFKDENFNTAMAVLNSGDAAKGDQKGRRGGIAN
KDPTQTDIFKMVKMIMERDFAPVIVFSFSKKDCELYATQMTKLDLNSAEEKKLVDEVFNN
AMDVLSDEDRHLPQVENLLPLLRRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFA
MGLNMPARTVLFTGVRKYDGSEYRWITSGEYIQMSGRAGRRGLDDKGIVILMVDENVPSS
TGRDIVKGLPDPINSAFHLTNNMILNLVRVEEINPEYMMERSFYQFQNQASIPGLYKHYK
ECIEEHKKLEIENENVISSYYNIREELTSLGKQFQSYITKSQYLLPFLQPGRLVKIKNKD
DVYDWGAVINFIKTHDTNNSGGKRGGGRSNPAKTSVKLQVDLLLHVVPAESGVNNDNIIP
KPCPENEHGEVEVVSLDSSLITHISSVRLYCPVDLRSKDNRKGMLKAIKEVKRRFSEGPP
LLDPISDMKIKEPEFENIFKKIGVLEKKMYAHEMHKHPDLNTIYANYEKKVKLANEVIEA
KKKLQQAKSVLQLDELKCRKRVLRRLGYCTNADVIEMKGRVACELSSGDELLLTEMIFNG
VYTSLSPAQACAILSCFVCDEKSSDPPKLTEELSGPLRQMQDLARRIAKVSTEARLELQE
DNYVERFKPFLMDVVYSWCNGANFSDLCHLTDIFEGSIIRAMRRLEELLRQMVQASKTIG
NTELEDKFNTAIKLIKRDIIFASSLYL
NT seq
3144 nt
NT seq
+upstream
nt +downstream
nt
atggctgaaaacgtagacgaattgttcgagtgcttcgatgagaaacctaccgccaaacga
ttaaaaaccgttgaagttgatgtagatgaagacaagggtgatggtaaacccgccagcacc
agcaaaagtaccgttgattgcggacctggaagcagcgagggcgttaaaagagaaggggat
gatgttgaaaatgtcgttattaaacggaccaaaatcgaagatgatcttacgttggatgaa
attaattttgacgaatttgacaataggattgttgttcataccatcgaatcattagaatca
tgtacacacgaggtggcttatcctccaggacaaacatatattccattgcagccaccaagt
ggagagccagcgaaaacatatcaatttacattggatccatttcaaaaagaatctattcta
tgtgtagataacaaccaatcagttttggtttcagctcacacatcagcaggaaaaacagtt
gttgctgaatatgctgtggcgacttctttgcggaataaacaacgagtaatttatacaact
cctataaaagcactttcaaatcaaaaatatcgagaattttatgatgaatttaaagatgtt
gggttagttactggggatgttacgattaatccaagtgcttcttgtcttattatgaccaca
gagattttgagaaatatgttatatagaggttcagaaataatgcgtgaggtaggttgggtt
attttcgatgaaattcattatatgcgcgataaagaacgcggagttgtttgggaagaaacg
ttaattttattacctcacaatgtccattttgtatttctttccgcaacaattccaaacgcg
cgacaatttgtagaatgggtaacaaatatccatcaacaaccatgtcacgtcgtttacact
gattacagacccacacctttgcaacattacatatttccttctgggggacaaggaattcat
atggttgtagacgaatcagggacatttaaagatgaaaatttcaacactgctatggcagtt
ttaaactctggcgatgctgctaaaggcgatcaaaaaggtcgaaggggtggaattgcaaat
aaagatccgacccaaactgatatttttaaaatggttaagatgataatggaacgtgatttt
gctcctgtaatcgtttttagttttagtaaaaaagattgtgaactttacgcgacacaaatg
actaaattagatttgaattcagctgaagaaaaaaaacttgttgatgaagtttttaataac
gcaatggatgttttatcagacgaagacagacatttaccacaagttgaaaatttattaccg
ttattaaggcgaggtattggaatacatcatggtggtttattaccaattttaaaagaaaca
atagaaatactctttagtgagggtttaattaaagcattatttgccactgaaacattcgca
atgggacttaatatgcctgcaagaacagttttattcacaggtgttcgaaaatatgatggt
agtgaatatagatggataacatctggagaatatattcaaatgtcgggtcgcgctggcagg
agaggtttagatgataaaggaatcgtaattttaatggtagacgaaaatgttccgtcgagt
accggacgagacattgtaaaaggtctgccggatccgattaattccgcgtttcatctcacg
aataatatgattttaaatttggtgagagtggaagagattaatcctgagtatatgatggaa
cgttcattttatcaatttcaaaatcaagcttcaattccagggctgtataaacattataag
gaatgtattgaagagcataaaaaattagaaatagaaaacgaaaatgttatatcaagttat
tataacattagggaagaattgacatcattggggaaacaatttcaaagttatatcacaaaa
tcacagtatcttttaccatttttgcaaccaggaagattagttaaaattaagaataaagat
gacgtttacgattggggagcggttatcaatttcatcaaaacccacgatactaacaatagt
ggagggaaaagaggaggtggaagatcaaacccggcaaaaacatctgttaagctacaagtg
gaccttcttctccatgtggttccagctgaatcaggcgtgaataacgacaatataataccg
aaaccatgtccagaaaatgagcatggcgaagttgaagtagtttccctggacagttcactt
ataacgcacatatcatctgttcgtctttattgccctgtcgatttgcgaagtaaagataac
agaaaagggatgttaaaagcgatcaaagaagtgaaacgaagatttagtgaaggcccccca
cttttagaccctataagcgatatgaaaattaaagaacccgagtttgaaaatatttttaag
aaaattggggtgttagaaaaaaaaatgtacgctcatgaaatgcataaacatcccgatttg
aatacaatttatgctaattatgaaaaaaaagtaaagttagccaatgaagtgattgaagcc
aagaagaaattgcaacaagctaagtcagttttacaattggacgagttaaagtgtcgaaaa
cgtgttttgagaaggttgggttattgtacaaatgctgatgttattgaaatgaaagggagg
gttgcttgtgaacttagcagtggggatgaattacttttaacagaaatgatttttaatggc
gtttatacatctttatcgcctgcacaagcatgtgccattttaagttgttttgtttgcgat
gaaaaaagttccgacccgcctaaattaactgaagaattatcaggacctttaaggcaaatg
caggatttggctcgaaggatagcaaaagttagtactgaagcgagattagagcttcaagaa
gataattacgtcgaacggtttaaaccctttttaatggatgtggtttattcttggtgtaat
ggagcgaattttagcgatttgtgccatttaaccgacatttttgagggttcgataatcagg
gcgatgcgacgactcgaggagcttttgaggcaaatggtgcaggcttcgaaaactattggt
aatacagaattagaggacaaatttaatacagccattaaattaattaaaagggatatcatt
tttgcgtctagtttatatttgtag
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integrated database retrieval system
