Onthophagus taurus (bull-headed dung beetle): 111415946
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Entry
111415946 CDS
T07420
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
otu
Onthophagus taurus (bull-headed dung beetle)
Pathway
otu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
otu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111415946
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
otu03021
]
111415946
03019 Messenger RNA biogenesis [BR:
otu03019
]
111415946
Transcription machinery [BR:
otu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
111415946
Messenger RNA biogenesis [BR:
otu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
111415946
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
Pcf11_helical
zf_PCFS4
Pcf11_C
zf_UBZ
Pfc11_Clp1_ID
Motif
Other DBs
NCBI-GeneID:
111415946
NCBI-ProteinID:
XP_022903616
LinkDB
All DBs
Position
11:complement(23708442..23725845)
Genome browser
AA seq
1792 aa
AA seq
DB search
MMSSTSREVREYVSTLDDLTCNSKPMINVLTMLAGENVAHASDIVATIESHLDKVPKDIK
LPVLYLIDCIMKTVGGIYLSLFSQNIVSTFCQTFEVVDEKTRSEMFKLRQTWNDVLPKTK
LYNLDVKVNQHLDPAWPISDPPVTNNIHLNPKFLQNMTLPKKSPPIAIPTSANAPPEVGP
STLDMQKKLLMKQQQLLELQQKRLELEVLQAQVKLQERMNMGNGTSSTTDGPKINKAQNI
LLKPEVAKQLSGGTNNSKNTKQLTSSSVMNKRLLPNAGNSGVSNASTPKITPVNSALVAA
ASSGRTRDPRLARLQSSGGSTATSAPINTTVSSNVPLENKSNINAETLGSNANNNKSLNI
NKASVQGNSRSDPRSQVSSKGSAPPSAQTKSKTPTTQSLTKKSDKSSDLFSTKAVRAGRS
GSKLSSPSKGSSGSASSLDSSPTKNKSGKSESKTGGSRSSSASPNKHKKKEKIPKITSSS
VPTSSSSSSSSLNNLGKADKESRTLSPGKSQSDALTTTFKELKPSSKSRNYIRRNRDLSV
SPEPVRDVDLRLSGPPEKQARLQCDISEDNGNGTFPKYLIGSTDDLTVTGMDVDLRHLPS
MVSKKRSSTDNPDPSLNVSSKKSKTEVFDELFGNEDTDLRQLTSVVNTPSQDRPPTPPPP
IISSKPEEEKSEKVKKLDILRAKLANATNREKLRTKQEQKQKDTDLRGGTNSADDSMSRI
IISSADEQCIKTGNMTKEQEKALMNKILAQMENQKLNEAKRKDNEENLGNITLQPISDDE
LEANFSCSSDEDTATFRRNIYVDKDDRVPQVNNNEFNKFPRGPDRGDLRRGMWRGRPVRG
RGMIRGGIRLPMRPGENWPRPLNGPWKPMQSNFIKQSPIYNNEVIDLDSLEQEQTTTENS
PQELVVDCANQDNTKSINIDGYPRDIRYYDETAIIFMSWDEPKEISFQSGVRKVIFGDKD
IYYLSFNEPYKEVLINGSPHNVKLGAPTREIYVDGKNYECFFGGPQVFIDLDGKLTSLKM
EGPPPQVKIGTEIRKDLVAGQINLIIDAKTVVPVYLDGKLQKFEIDGKPNTLKFIDALKT
VMINEIPFTVEYGGLPKPIIVQEKKHFIRFTRLPRGVHPGVVRIKDMEGFRPDSPKIESE
NSMEAFPVVDANEPALPVVAKKRKLIGVESPDRNSNSPVPNLFQQTGLNNLDSVLSSVMA
SNLLANPTNLNISTNGYQVENQPKEIPMQEAPQEIHDVPVSQSTTTTPNPAPLIPTTLNI
NDLFQKLVATGIMTTLQEQKNVTPEVTIPAPQIINKNINPPLVNSNIVNKLPQIPSPPHK
ITPVSSFLRKEMPQFYRAVNFDKPETLKTRHSSLVHSLYSGMPCSTCGMRFPPEQSMQYS
QHLDWHFRQNRKGKKNIRKAASRRWYYSLSDWKNYEEIEDLEEREKSYFENQQQAQAEGN
DEIEEEIEIPSVPADPNIQDPRCEVCHDRFDQFYNEEKEEWHLKLAICVDGLNYHPLCYE
DYQASLVDTTLEDSAIEKEDETTQDSTIPGLDTLPEEKMEETTSEIVIDDDESEKLTEIS
ETKDKEEISQEAFPDDPEENDDDDDDDVIINEIVPEKIDLVDDDRYDDLPDEKLEPRVIQ
IKEEPIDDGFVDVDGAIFKMDIDSVKIKSEPIDPDELEGDDLLLVDGGGVDVAEKITSEP
VTDAHPTDLVTHMDGNVEFFDSNVQPTTGISGKIKINITKPLPVIAPKESSTNKELSSEI
EKGGESIDPSQPLPPGEEPVQLNVKPALRGINLKKMAPVKKGAELSGLCSIM
NT seq
5379 nt
NT seq
+upstream
nt +downstream
nt
atgatgtcgtcgacaagtagagaggtgagggagtacgtttcgacgttggacgatttgacg
tgcaacagtaaaccgatgataaacgtgcttacaatgttggctggagagaatgttgcccat
gcatccgatatcgtcgccaccatcgaatctcatctcgataaggtgcccaaggacatcaag
ttgccagtgttgtacctcatcgattgtattatgaagactgtcggtggaatctacttgtcc
ctcttcagtcagaacattgtttccacattttgtcaaacttttgaagtggtggacgaaaaa
actcgttcagaaatgtttaagctgcgccaaacatggaacgatgtcctcccaaaaacgaaa
ctttacaacttagatgtgaaggtcaaccaacacctggacccggcttggccaatttcggat
ccccccgtcacaaataacattcatttaaatccgaaatttttacaaaatatgacgcttccc
aaaaaaagcccccccatcgcgatcccaacgtctgcgaatgcgcccccagaggtcggacct
tcaaccctcgatatgcagaagaagttattgatgaagcaacagcagttgttggagttgcag
cagaagaggctcgaattggaggtgttgcaggcgcaggttaaattacaagaaaggatgaat
atgggaaatggaacttctagtactacagatggaccgaaaataaataaagcacagaatatt
ttgttgaagcctgaagttgcaaagcagttatcagggggcactaacaattcaaaaaataca
aaacaattaacttcatcatctgtaatgaataaaagattacttccaaacgccggtaattct
ggagtatcaaacgcatcaaccccaaaaataacacccgtaaatagtgcgctggtggcagca
gcatcgagtggtcgaacgagggatccgcgattagcccgacttcaaagtagtggtggctca
acagcgacgtccgcgcccatcaataccactgttagttctaatgtgccgttagagaataaa
tcaaatataaacgcagagacattaggttcaaacgctaacaataataaatcattaaacatt
aataaagcgagtgttcagggcaacagccgttcagacccccgttcacaggtttctagcaaa
ggtagcgcacctccttccgcgcaaaccaaatcaaaaacgcctacaacccaatccttaacg
aaaaaatctgataaatcgtccgatttattttccacaaaggcggttagagctggccgttca
gggtctaaactctctagcccgtcaaaaggaagtagtggctccgcaagctctctcgattcg
tctcccacaaaaaataaaagcggtaaaagtgagtcgaagaccggcggtagccgctcctct
tccgcttcgcccaataaacacaaaaagaaagagaaaatcccgaaaataacctcgtccagc
gtaccaacgtcctcttcttcctcctcgtcctccttaaacaatttgggtaaggctgataaa
gagagcaggaccctctcgccgggtaaatcgcagagtgacgctttgaccacgacgtttaaa
gaactaaaacccagctctaaaagtcggaattacatccgtcgcaatcgagatttatccgtc
agcccagaaccagttcgagacgtcgatcttcgtttgagcggaccacccgagaaacaagca
agactacaatgtgatatctccgaggataatggaaatggtacatttcctaaatatttaata
ggttctacagatgatctcactgtgacaggtatggacgtcgatttaagacatttaccttcg
atggtcagcaagaaacgttcttcaactgacaatccagacccgagtttaaacgtttctagc
aaaaaatcgaaaacggaggtgtttgatgaattatttggtaatgaagatacagatttgcgt
caacttacatccgtggtaaatacaccttctcaagatagacccccaacaccgcctcctcca
attatttcgtcgaaacctgaagaagaaaagtcagaaaaggttaaaaagttagatatatta
agagcgaaattagctaatgctacgaatagggaaaaattaaggactaaacaggaacagaaa
caaaaagatactgatttgcgtggtggaactaatagtgcagatgattctatgagtcgaata
ataatatcttccgctgatgaacaatgcataaaaaccggaaatatgactaaagaacaagaa
aaggcgttaatgaacaagattttggcgcaaatggaaaatcaaaaattaaatgaagcaaaa
cgaaaggataacgaagagaatttgggaaatattacattacaaccgattagtgatgatgaa
ttagaagctaattttagttgtagttccgatgaagatacagctacttttagacgaaacatt
tatgttgataaagatgatagagtacctcaagttaataataacgaatttaacaaatttcca
agaggcccagatagaggtgatttaagacgtggaatgtggcggggacgtcctgtgagagga
cgaggaatgatcagaggaggaattcggctacccatgagaccaggagagaattggccacga
ccattaaatgggccatggaaaccaatgcaatcaaattttataaaacaatcaccaatttac
aacaacgaagttattgatttggatagtttagaacaagaacaaacaacaaccgaaaatagc
ccacaagaattagtcgtcgattgtgccaatcaagataacacaaaatcaataaatatcgat
gggtacccaagagatatccgttactacgacgaaaccgcgattattttcatgtcttgggat
gagccgaaagagatctcgtttcaaagtggagtaagaaaagtgattttcggcgataaagat
atttattatttgtcatttaacgaaccttataaggaagtgttaattaacggaagtccgcac
aacgtgaaattgggggcgccgactcgagagatttacgtcgacggaaaaaattacgaatgt
ttttttggcggtccgcaagtctttatcgatctcgacgggaaattgacctctttgaaaatg
gagggacccccgcctcaagttaaaatcggaacggaaatacgcaaagatttagtcgccgga
caaattaatttaataatcgatgcgaaaacggtcgttcccgtttatttagacggaaaatta
caaaaattcgaaatcgacgggaaaccaaatacacttaaatttattgacgctttaaaaacg
gtgatgattaatgaaattccgtttaccgtcgaatatgggggacttccaaaaccgattatt
gtgcaggaaaaaaaacattttattcgatttacgcggttaccacgcggggtgcatcctggg
gttgttaggattaaagatatggaaggatttcgcccggatagtcctaaaattgagagtgag
aatagtatggaagctttcccggttgttgatgctaatgaacctgctttacctgtggttgct
aaaaagcggaaacttatcggggttgaatcacccgatagaaattcaaattcgccagttcct
aatttattccaacaaacggggttaaataacttagatagtgttttatcgagtgttatggca
tcaaacttacttgcaaacccaacaaacttaaatataagtacaaatggatatcaagttgaa
aatcaaccgaaagaaattccgatgcaagaagcacctcaagaaattcacgatgtacctgtt
agccaatcgacaacaacaacaccaaatccagctccattaattcccacaaccttaaatatt
aacgatttgttccaaaaattagtcgcaactggaataatgaccacattgcaagaacaaaaa
aatgtaacccccgaagttacaataccagccccccaaataattaataaaaacattaatcct
cctcttgtgaatagtaatatcgtaaataaattaccccaaataccttcaccacctcacaaa
atcaccccagttagtagtttcttaagaaaggaaatgccacaattttacagagcggttaat
tttgataagccagaaactttaaaaactcggcattcgagtttagtgcattccctttattca
gggatgccgtgtagtacgtgcggaatgcgtttcccaccggaacaaagcatgcagtatagc
caacatctcgattggcacttccggcaaaatcgcaagggaaaaaagaatattcgaaaagca
gccagtcgcaggtggtattattctttatccgattggaaaaattacgaagaaatcgaagat
ttagaggagcgtgaaaaaagttactttgaaaaccaacagcaagcgcaagccgaaggcaat
gacgagattgaggaagaaattgaaattcctagcgttcccgctgacccaaacatacaagat
ccccgatgcgaagtttgtcacgatcgtttcgatcagttttataatgaagaaaaggaagag
tggcatttaaaactagctatttgtgttgatggattgaattatcatcctttatgttatgaa
gattaccaagcctctttagttgatacaacattagaggattcagcgatagaaaaagaagat
gaaacaacccaagatagtacaataccaggtttagatactttaccagaagaaaaaatggaa
gaaaccacatccgaaattgtaatagatgacgatgaatctgaaaaattaaccgaaatttct
gaaactaaagataaagaggaaatatcgcaagaagcgtttccggatgatccggaagaaaat
gatgatgatgacgatgatgatgtaataataaatgaaattgtcccggaaaaaatcgatttg
gttgatgatgatcgttacgatgatctccccgatgaaaaattagaacctagagtgatccaa
attaaagaggaaccgattgatgatggttttgttgatgttgatggcgctatttttaaaatg
gatattgatagtgtgaagataaaaagcgagccaattgatccagatgaattggagggtgac
gatttattattagtggatggtgggggagttgatgtagctgaaaaaataacttcagaaccg
gtaacggacgcccacccaaccgaccttgtgacgcatatggacggtaacgtagagttcttt
gactcgaacgttcaaccaacaaccggtattagtggtaaaataaaaataaacataacgaaa
ccgttgcctgtaattgcgcctaaagagagtagtaccaataaagagttgagtagcgaaatt
gagaaaggtggtgaatctatagacccgtcccaacccttgccccccggcgaggagcctgtc
cagctcaacgtcaagcccgcgctgcggggtatcaacctcaaaaaaatggccccagttaaa
aagggagccgaactctctggactttgttccattatgtga
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integrated database retrieval system
