Oncorhynchus tshawytscha (Chinook salmon): 112214260
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Entry
112214260 CDS
T05605
Symbol
rbm17
Name
(RefSeq) splicing factor 45
KO
K12840
splicing factor 45
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112214260 (rbm17)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
otw03041
]
112214260 (rbm17)
Spliceosome [BR:
otw03041
]
Complex A
U2 snRNP components
U2 related factors
112214260 (rbm17)
Complex B
112214260 (rbm17)
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Motif
Pfam:
G-patch
RRM_1
DUF8489
RRM_MUD2_C
Na_trans_assoc
Motif
Other DBs
NCBI-GeneID:
112214260
NCBI-ProteinID:
XP_024228652
UniProt:
A0A8C8FRV9
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Position
LG33:13404772..13418545
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AA seq
430 aa
AA seq
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MSLYDDMGVGSATSDTKTEGWSKNFKLLQSQLKVKKAALTQAKSQRMKQGTVLAPVIDLK
RGGSADDRQIIDTPPHIAAGLKDTAPSGFSSGDTLIPLADEYDPMFPNDYEKVVKRHREE
RQRQREQERLKEIEEREKKRKDRHEGSSAPSGFSRFPVAEGESDEEEEDYEKEKRKRSMG
GAAIAPPSSLVDSRDSSSYSYEDEMRSSRGSKAAIPPPMYEDSDRPRSPPGGPTNSFLAN
MGGTVAHKIMQKYGFREGQGLGKHEQGLSTALSVEKTSKRGGKIIIGDATEKTPGSSNQT
AAAEPLGWGSASIVDPSKKSEANPLTEILKCPTKVVLLRNMVGRGEVDEDLEGETKEECE
KYGKVIKCVIFEIAQVTDDEAVRIFLEFERVESAIKAVVDLNGRFFGGRVVKACFYNQDK
FRVLDLGEQM
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctttacgacgacatgggcgtcgggagtgcgaccagtgacaccaagaccgaaggc
tggtccaagaattttaagctactgcagtcacagctgaaagtaaaaaaagcagctctgact
caggctaagagtcagcggatgaagcagggtactgtcctggctccagtcatcgacttaaag
agaggaggttccgctgatgacagacagataatagacacacccccacacattgcagcagga
ctcaaggatacagcacccagcgggttctcctcgggggacacgctaatccccctggctgat
gagtatgaccccatgttccccaacgactacgagaaggtggtgaagagacaccgcgaggag
aggcagaggcagagagagcaggaacgactgaaggagatagaggaaagagagaaaaagagg
aaggaccgacacgagggcagcagcgctccgagcggattctcccgcttccccgtggcagag
ggagagtcagatgaggaggaggaggactatgagaaggagaagagaaaaaggagtatgggt
ggagcagccatcgccccaccctcatcgctcgtggatagtagagacagctcgtcatactcc
tatgaggatgagatgcgatcctcccgtggttctaaagcagccatccctccccccatgtac
gaggactccgaccgcccccgctcgccacctggcggtcccaccaactcgtttctggccaac
atgggagggaccgtggcccataagatcatgcagaagtatggcttccgggagggccagggg
ctgggcaaacacgagcagggtctcagcacggccctgtctgtagagaagaccagcaagagg
ggtggcaagatcatcataggagacgccactgagaagacaccaggatccagtaaccagacg
gcagcagctgagcctttaggctggggctcagcttcaatagtggacccctccaagaagtca
gaggccaaccccctcacagagatcctcaaatgccctaccaaagttgtgctgctacggaac
atggtgggcagaggagaggtggatgaagatttggaaggggagaccaaagaagagtgtgag
aaatatggcaaggtcatcaagtgtgtcatctttgagattgcccaggtgacagatgatgaa
gcagtgaggatatttctggagtttgaaagagtcgagtctgccatcaaagctgtggtggat
ctgaacgggaggttctttggtggtcgggtggtaaaagcctgcttctataaccaggataag
ttccgagtgttggacctgggagagcagatgtga
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