Oncorhynchus tshawytscha (Chinook salmon): 112214404
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Entry
112214404 CDS
T05605
Name
(RefSeq) regulator of nonsense transcripts 2-like isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03013
Nucleocytoplasmic transport
otw03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112214404
03015 mRNA surveillance pathway
112214404
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112214404
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
112214404
mRNA cycle factors
P-body specific factors
112214404
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
112214404
NCBI-ProteinID:
XP_042154076
LinkDB
All DBs
Position
LG15:11248508..11269245
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AA seq
1324 aa
AA seq
DB search
MLAEGKRSLNMDEKEVSSFSNKEKDREGDRRPASSRDKVKDEAKMSGKKDIGKAAEEKRR
RLEEDKRKKEEKERKRKEEEKLKAEEEQRKKEEEEKKQQEEQERKVQEEEAKRQREEEAA
QLKEKEEGHQLHQEAWERHQCRKELRIRNQNAHEGRPEETFFSRLDSSLKKNTAFVKKLR
TLTEQQREALSNDFGSLNLSKYIGEAVGSVVEAKLKISDVGCAVHLCSLFHQRYAEFAPL
LLQAWKRHFEARKEEKAPNVSKLRTDLRFIAELTIVGLFTDKEGLSLIYEQLKSIIGTDR
ETHTHVSVVISFCKHCGDDIAGLVPRKVKAAREKFGLAFPPSEIINTEKQQPFQNLLREY
FTSLTKHLKKDHRELQNIERQNRRILHSKGELSEDRHKQYEEFATSYQKLLANTQSLADF
LDENMPELPLDKTVQEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENMVDLKAFVP
AILFKDNEKGKDKEEAAGKEAKDAAATTEELELELEALDIADDPLELDGPDEAENEAELA
KKLLDEQGKDEEQEDEEASTGSHLKLIVDAFIQQLPNCVNRDLIDKAAMDFCMNMNTKSN
RRKLVRALFTVPRQRLDLLPFYSRLVATLHPCMSDVADDLCSILKGDFRFHIRKKDQINI
ETKNKTVRFIGELAKFKLFSKTDTLHCLKMLLSDFSHHHIEMACTLLETSGRFLFRSPDS
HLRTSVLLEQMMRKKQAQHLDARYVTMVENAYYYCNPPPMEKTVRKKRPPLQEYIRKLLY
KDLSKVTTEKVLRQMRKLPWQDPESKGYLICCMVNIWNIKYNSIHCVANLLAGLVAYQED
VGIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLFSFISFG
VNPDGSPSPLDPPEHLFRIRMVCTLLDTCGQYFDRGSSKRKLDCFLIYFQRYIWWKKSVE
VWSAEHLFPIDIDYMISDTLELLRPKMKLCISLEDSTRHVTELEREFLVKLGLAMDGQKD
GRPSSAMGSEGEALDEDDEDDDEEGGADTEEQSGNESEMNEPEEEEGSENEEEEREEEEE
ENTDYLTDSNKENETDEENNEVTIRGGGLKHVACAEDEDFIQALDKMMLENLQQRSGEAV
KVHQLDVAIPLQLKSQLKKGPGGPVCSGEGDGGISDTMQFVMLTRKGNKQQFKILNVPLS
SHLAANHFNQQQAEQEERMRMKKLTLDINERQEQEDYQEMMASLAQRPAPANTNRERRPR
YQHPKGAPNADLIFKTGGRKQETKQERNERHEKRDRQERQEKHKRNNRYEGQEARASQLS
RTRY
NT seq
3975 nt
NT seq
+upstream
nt +downstream
nt
atgcttgctgagggcaagagatcattaaacatggatgagaaagaggtgagctcctttagt
aacaaggagaaagacagagagggtgatagacggcccgcctcctcccgggataaagtgaag
gatgaggcaaagatgagtggcaagaaagatatcggtaaggccgcagaggaaaagaggagg
agacttgaggaggacaaaagaaagaaggaagaaaaggagcggaaacggaaagaggaggag
aaactgaaggcagaggaggagcagaggaagaaggaggaagaggagaagaagcagcaggag
gagcaggagaggaaagttcaggaggaggaggccaagagacagcgtgaagaggaggcagct
caactcaaggagaaggaagagggtcaccagctccaccaggaggcctgggagcgccaccag
tgccggaaggagctgcgcatccgcaaccagaacgcccacgagggccgtcccgaggaaacc
ttctttagccgccttgactccagcttgaagaagaacacggccttcgtcaagaagctgcgc
acgctcactgagcagcagcgtgaagccctctccaatgacttcggctcgctcaacctcagc
aagtacatcggcgaggcggtgggctcggtggtggaggccaagctgaagatctctgatgtg
ggctgcgccgtgcacctgtgctccctctttcaccagcgctacgctgaatttgccccactg
ctcctccaggcctggaagaggcactttgaggcacgcaaggaggagaaggcgcccaacgtg
agcaagctgcgcaccgacctgcgcttcattgcagagcttaccatcgtgggcctgtttacg
gacaaggagggcctttcgctcatctacgagcagctgaagagcatcattgggacagaccgc
gagacacacacgcatgtgtcggtggtcatcagcttctgtaagcactgtggggacgacatc
gcgggcctggtgcctcgcaaagtgaaggctgcacgggagaagtttggcctggccttccct
cccagtgagatcatcaacacggagaagcagcagcccttccagaaccttctgagggagtac
ttcacctcgctcaccaagcacctgaagaaggaccaccgcgagttgcagaacatcgagagg
cagaacaggcgtatcctccactccaaaggggagctgagtgaggacagacacaagcagtat
gaggagtttgctacatcctaccagaagctgctggctaacacccagtctctggctgacttt
ctggatgagaacatgccagaacttccactggacaagactgtgcaggaagagcacggccct
ggcattgacatcttcacccctgggaagcccggggagtatgacctggaggggggcatctgg
gaggacgaggatgccaggaacttctatgagaacatggtggacctgaaggccttcgtcccc
gccatcctgttcaaagataacgagaagggcaaggacaaagaagaggctgctggtaaagag
gctaaagatgctgcggccaccacagaggagttggagttggagctcgaggctctagacatc
gctgatgaccctctggagctggatggacctgacgaggcagagaacgaggcagagcttgcc
aaaaaactattggacgagcaaggtaaagatgaagaacaagaggatgaggaggcaagcacc
gggtcccacctgaagctcatcgtggacgccttcatccagcagcttcccaactgcgtcaac
agagacctcatagacaaggctgccatggatttctgcatgaacatgaacaccaagtcaaac
aggaggaagctggtccgggctctcttcaccgttcccagacaaaggttggatctgctgccc
ttttactcccgtctggtggccacccttcacccctgcatgtcagatgtggccgatgacctg
tgctccatactcaaaggagacttcaggttccatatccggaagaaggaccagatcaacatc
gaaaccaaaaataaaactgtacggtttatcggggagctggcaaagttcaaactgttctct
aaaacggacactctgcattgtctgaagatgctgctgtcagacttctcccaccaccacata
gagatggcctgcactctgctggagaccagtggacgcttcctcttccgatcccccgactcc
cacctccggaccagcgtccttctggagcaaatgatgcgtaagaagcaggcgcagcacctg
gatgctcgctacgtgaccatggtggagaatgcctactactactgcaaccccccgcccatg
gagaagactgtcaggaagaagaggcccccgctgcaggagtacatccgcaaactgctctac
aaggacctctccaaggtcaccacggagaaggtgttgaggcagatgcgtaaactcccctgg
caggacccagagtctaaaggctacctgatctgttgcatggtcaacatctggaacatcaag
tacaacagcatccactgtgtggccaacctgctggccggccttgtggcctaccaggaggac
gtgggcatccacgtggtggatggggtcctggaggacatccgcctgggaatggaggtgaac
cagccgaagttcaaccagcgtcggatcagcagtgccaagtttctgggggagctctacaac
taccgcatggtggagtcagcggtcatcttccgcaccctcttctccttcatctcgttcggc
gtgaacccggacggcagccccagccccctggacccccccgagcacctgttccgcatccgc
atggtctgcaccctgcttgacacctgcggacagtactttgaccgcggctccagcaagagg
aagctggactgcttcctcatctacttccagaggtatatctggtggaagaagagtgtggag
gtgtggagtgcagagcacctgttccccatcgacattgactacatgatcagtgacaccctg
gagcttctccggcccaagatgaagctctgcatctccctggaagactccacacgacacgtc
accgagttggagagggagttcctcgttaaactgggactggccatggatggacagaaggac
ggccggccctccagtgccatggggagtgaaggcgaggctctagacgaggatgacgaggat
gacgacgaagagggaggggcggacacagaggaacagtctggcaatgagagcgagatgaat
gagccagaggaagaagaagggtctgagaatgaggaagaggagcgggaggaagaggaggag
gagaacactgactatctgaccgactccaacaaggagaacgagacggacgaggagaacaat
gaggtgaccatccgtggtggcggtctgaagcatgtggcatgtgctgaggatgaggacttc
atccaggctctggacaagatgatgctggagaacctgcagcagcggagcggggaggcggtg
aaggtgcaccagttggacgtggccatccccctgcagctgaagagccagctgaagaaaggc
cctggaggacccgtctgctctggagagggagatggaggcatctcagacaccatgcagttt
gtcatgctcacgcgcaagggcaacaaacagcagtttaagatcctgaacgtgcctttatcc
tcccacctggctgccaaccacttcaaccagcagcaggcagagcaggaggagaggatgagg
atgaagaagctcactctggacatcaacgagagacaggagcaagaagactaccaagaaatg
atggcgtctctggcccagcggcccgctcccgccaacaccaaccgggagcggcgcccgcgc
taccaacaccccaaaggggcacccaacgccgacctcatcttcaagaccggaggaagaaag
caggaaacaaagcaggagagaaatgaaaggcacgaaaagcgtgacagacaagaaaggcaa
gagaaacacaagagaaacaacagatatgagggccaggaggctagggccagccagctcagt
cggacacgctactga
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