Oncorhynchus tshawytscha (Chinook salmon): 112214452
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Entry
112214452 CDS
T05605
Name
(RefSeq) transcription intermediary factor 1-alpha
KO
K08881
tripartite motif-containing protein 24 [EC:
2.3.2.27
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
otw01001
]
112214452
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
otw04121
]
112214452
Enzymes [BR:
otw01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
112214452
Protein kinases [BR:
otw01001
]
Serine/threonine kinases: Other
TIF1 family [OT]
112214452
Ubiquitin system [BR:
otw04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
112214452
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bromodomain
zf-B_box
PHD
zf-RING_UBOX
zf-RING_5
zf-C3HC4_2
DUF3583
zf-C3HC4
PRANC
DUF5054
ParB
Motif
Other DBs
NCBI-GeneID:
112214452
NCBI-ProteinID:
XP_024228967
LinkDB
All DBs
Position
LG15:13590757..13606667
Genome browser
AA seq
1145 aa
AA seq
DB search
MDESPEAAVDNDDLVIIVENEAESLPAEEERAKQLGGSIGLMDTCPVCKLNFHNREPKLL
PCLHSFCKKCLPPPSRNLVNSEQRRDPQLQADNSKPLNVIRCPVCRQECWEVEVLDNFFV
KDSVEVPSSTVEKTSQVCMSCDDNTEATGFCVECVEFLCVTCIEAHQRVKFTRDHTIRQK
EEMSPEAVGASSQKPVFCDIHKQEPLKLFCETCDRLTCRDCQLLKHKDHNYQFLEDAYRN
HRQHLENMTHQLQEKRKAIEEVSNCINNGLQQVDENRKSVTNEIKKSICNLIMEINRKGK
ILVNQLETLTKDHEVGLKKQQEDVSHLTRHLDHVINFTKWATASHSGTALLYCKRLILCQ
IHYLMRANCNASIVPQSSVRFQCRSGFWASNVDLGSLAVERIPGRQPSSMQQGFPPGHPS
QPGPGPRGEGPPVAFPPGSSAHQRGSTLAQLQLQVEKLAQHPNRAGQPPPNHWSWYQQGL
KLPGPGGPPPQRPHQGGSPSQGPPNMVQIQQPGRSYGPPGPQTHPNPRSPTSMLQNAGFP
PQSLRDLIHNSSFPPKPMDVLQGTSRYSHAPPPNTGPISTQASIHQRNMMEAAQLRRSDP
SGASSSLSMTNPRASYAPSLATAFPDRHAQGRQNSPMSKSSSEANIGSASWKRTEPNAAA
PPSSAKRRRRSSPGPIIVIKDEPEDDDEVSFVQSSVGASASLPDSSTGIQPKPQPQQQSL
PAPMVEPQPEPQPEPQPEPQPEPQPETQPETQPETQVELEADPQPDPEKAPGVPEDDPNE
DWCAVCQNGGELLCCDRCPKVFHLNCHIPTLRESPSGEWFCSFCRDLTSPEMEYNPDSQG
ELPAMKEEPGSEGFLPVDKRKCERLLLCIYCNEFSTDFQEPASPSSIPEYKELIETPMDL
SIVKSRLESKESPCYCSAEEFVKDVRLIFRNCAKYYQADTEVGGAGLSLEEYFEEQLKFL
YQDRSFPGGREEGMIPPVEDEMEEGMEDDGMAPNEGDMPPVEDDLTPVEEGMPSMEKEGT
EEVMDPVEGEMEEEGIPPLEESMEEEETSVKEDSLPCDATEPVDPSIRGASSPNLSSKEA
PQPLSDTPDNPPCEEAPQPLSDTPDNPPDSQGTSTADSQDTSPAACLATENEGMTEEVRD
KAEEE
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
atggatgagagcccagaagctgctgtggacaacgatgaccttgttattatagtggaaaac
gaggcagagagcttgccagctgaagaggagagggcgaaacagctaggaggtagcatcggt
ctcatggacacttgccctgtctgtaagttgaatttccacaatcgagagccgaaacttctg
ccatgcctccactctttctgcaagaagtgtcttccacccccttcaaggaacttagtcaac
agtgaacaacgtcgcgacccgcaacttcaagccgacaactcgaaaccactcaatgtgatc
cgctgcccagtttgtcgacaagagtgctgggaggtggaggtgctggataacttctttgtg
aaggactctgtggaggttcccagcagcacagtggagaagaccagtcaggtgtgtatgagt
tgtgatgacaacaccgaggccacggggttctgtgtggagtgtgtggagttcctgtgtgtg
acgtgtattgaggcccaccagagggtcaagttcaccagggatcataccatacggcagaag
gaggagatgtccccagaggctgtgggtgcgtcctcacagaagccagtgttctgtgacatc
cacaagcaggagcccctcaaactgttctgtgagacctgtgaccgtctcacatgcagggac
tgtcagctgctcaagcacaaagaccacaattaccagttccttgaagacgcctacagaaac
cacaggcaacacctggaaaacatgacgcatcagctacaggagaaaaggaaagccatagaa
gaagtgtccaattgcatcaacaatggactccagcaagtcgatgaaaaccgtaagtctgtc
accaatgagataaagaagtcaatttgcaacttgatcatggagatcaacagaaagggaaaa
atcttggtcaatcaacttgagacactgacgaaggaccatgaggtcggactaaagaaacaa
caagaagatgtcagccacctgaccagacatctagatcacgtcatcaacttcaccaagtgg
gccacagccagtcacagtggcacagctctcctgtactgcaagagactgattctttgccaa
atccattacctaatgagggccaactgtaacgcatccatcgtcccgcagagctcagtccgc
ttccagtgtcgctccggtttctgggcctcaaatgtcgatcttgggtctttggcagtagag
agaatccctggtcggcagcccagttccatgcagcagggcttccctcctggccaccccagc
cagcctggccctggccccagaggagagggccctcccgtggctttccctccaggctcctcc
gcccaccagcgtgggagcaccctggctcagctccagctgcaggtagagaagcttgcccag
caccccaacagggctggacagccccctcccaaccactggtcctggtaccagcagggtctg
aagctcccggggccagggggcccccctccacagaggccccaccaggggggttctccgtcg
caaggtccccccaacatggtccagatccagcagccgggccggagttatggaccccccggg
ccccaaacccatcccaaccccaggagccccacctctatgctgcaaaacgcaggattccct
cctcagtctctgagggatctcatccacaactccagctttcctcccaaaccaatggatgtg
ctacagggtacctctcgctactctcatgcaccccctcccaacacaggacccatcagcact
caagcctctatacaccagcgtaacatgatggaagccgcacaactgaggaggagtgacccc
agtggagcttcatcatcattatccatgaccaaccccagagctagttatgctccgagccta
gctactgccttcccagacagacatgcacaaggaagacagaattcccccatgtccaaatct
tcctctgaagccaacatagggtctgcttcctggaagcgcacagagcctaatgcggcggct
cccccctcctcagctaagcggaggcgaaggtcatcccccggaccaatcatcgtcatcaag
gacgaaccagaggacgatgacgaagtcagctttgtgcagtctagtgttggagcctcagcc
agcctgccagacagcagtacaggcatccagcccaagccccagccccagcagcaatctctc
ccagcacccatggtggagccccagccggagccccagccggagccccagccggagccccag
ccggagccccagccagagacccagccagagacccagccagagacccaggtagagctagag
gcagacccccaaccagacccagaaaaggccccaggtgtccctgaagacgaccccaatgaa
gactggtgcgctgtgtgtcagaatgggggagaactgctctgctgtgaccgatgtcccaaa
gtcttccatctgaactgtcatatacctacacttagagagtctcccagtggtgagtggttc
tgttcgttctgtcgtgacctgaccagtcctgagatggagtataacccagatagccaggga
gaattgccagccatgaaggaggagccaggatcagagggattccttccagttgataaaagg
aaatgtgagagactgttgctctgcatctactgcaacgagttcagtacagatttccaggag
cctgcctcaccgtcgtcaatcccagagtataaggagctgattgagactccaatggacctg
tccatagtgaagagcaggctggaatctaaggagagcccgtgctactgcagtgctgaggag
tttgtcaaggatgtccggctcatattcaggaactgtgcaaagtattaccaggcagacact
gaggtgggaggtgcaggactgagcctggaggagtactttgaggagcagctgaagttcctc
taccaagacaggagcttccctgggggcagagaggagggcatgataccccctgtggaggac
gagatggaagaagggatggaagacgatgggatggctcctaatgaaggggatatgccccct
gttgaggacgacctaacacctgttgaagaagggatgccttctatggagaaagaaggaacg
gaagaggtgatggatcctgtggaaggagagatggaggaagaagggatacctcctttagaa
gagagcatggaagaggaagagacttcagtgaaagaagactcactaccttgtgatgctact
gaaccagtagatccatcaataaggggtgcatcatctcccaacctttccagcaaggaggct
ccccaacccctctcagatactccagacaaccctccctgcgaggaggccccccaacccctc
tcggataccccagacaaccctcctgactcccagggcaccagcactgctgactcccaggac
accagccctgctgcatgcttagccacagaaaatgaggggatgactgaagaagtgagagac
aaagcagaagaggaatga
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