Oncorhynchus tshawytscha (Chinook salmon): 112214458
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Entry
112214458 CDS
T05605
Name
(RefSeq) LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase TRIM23-like
KO
K07963
tripartite motif-containing protein 23 [EC:
2.3.2.27
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
otw04121
]
112214458
09183 Protein families: signaling and cellular processes
04031 GTP-binding proteins [BR:
otw04031
]
112214458
Enzymes [BR:
otw01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
112214458
Ubiquitin system [BR:
otw04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
112214458
GTP-binding proteins [BR:
otw04031
]
Small (monomeric) G-proteins
Arf/Sar Family
Others
112214458
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Arf
Roc
Ras
SRPRB
G-alpha
zf-RING_UBOX
zf-B_box
zf-RING_5
Gtr1_RagA
zf-RING_2
MMR_HSR1
zf-C3HC4
CEBP_ZZ
Motif
Other DBs
NCBI-GeneID:
112214458
NCBI-ProteinID:
XP_042158052
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All DBs
Position
LG20:7976178..7993994
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AA seq
579 aa
AA seq
DB search
MAVAMGVNKXGTAATMDVCVRHGRGATGSTVKVLECGVCEDVFSLQGDKVPRLLLCGHTV
CHDCLTRLPLHGRAVRCPFDRQVTELGDSGVWGLKKNFALLELLERLQNGASNQLGVAEE
SLKGMGESVIRCDEDESHTASMYCTVCATHLCANCSQLTHSTRTLAKHRRVPLADKPHEK
TLCPQHQVHAIEFVCQEEICQPGPLMCCVCKEYGKHQGHKHVVLEAEANQIRASILDMAH
CIRTFTEEVSEYSRKLVGIVQQIEGGEQTVDDGIGMAHTEHVPGTAESARSCVRAYFADL
HETLCRQEEMALSVVDAHVRERLIWLRQQQEDMAILLSQVSTACLHCERTLQQDDCRVVL
AKQEINRLLETLQKQQQQFTELADHIQLDAGIPVTFTKDNRVHIGPKMEIRVVTLGLDSA
GKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAV
VFVIDSCHRDRLMEAHSELAKLLTEKELRDALLLIFANKQDVPGAESVEEMTELLSLHKL
CCGRSWHIQGCDARSGTGLYEGLDWLSRQLVAAGVLDVA
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atggcggttgctatgggtgtgaacaaanncgggacagcagcaacgatggacgtctgtgtt
cggcacggcagaggggccacaggcagcacggtgaaggtgttggagtgtggtgtgtgtgag
gatgtcttctctctccaaggggacaaggtcccccggctgctgctctgcggtcacacggtc
tgccatgactgtctgacccggctgcccctgcatggtagagccgtccgctgcccctttgac
agacaggtcactgaactgggtgactctggtgtgtggggtctgaagaagaactttgctctg
ctggaacttctggagaggctgcagaatggagcgtccaaccagttgggcgtggcagaggag
tccctcaaaggcatgggagagagtgtaatccgctgtgacgaggacgagagccacacggca
tctatgtactgcacggtgtgtgccacccacttgtgtgccaactgctcccagctcacccac
tccacccgcaccctggccaagcaccggcgggtacccctggcagacaagccccacgagaag
actctgtgcccgcagcatcaggtccacgctatcgagtttgtctgtcaggaggagatctgc
cagcctgggccactcatgtgctgcgtgtgcaaagagtacggcaagcaccagggacacaag
catgtggttctggaggcagaagccaatcagatccgtgcatccatcctggacatggcccac
tgtatccggacgttcacagaggaggtgtcggagtattccaggaagctggttgggatcgta
cagcagattgagggaggggaacagaccgtggatgacggcatcggcatggcacacactgaa
catgtcccaggcacggcagagagcgcccggtcctgcgtacgggcctacttcgccgatctc
cacgagacactgtgcagacaggaggagatggcactcagcgtagtggacgcccacgtcaga
gagagactcatctggctccggcagcagcaggaggacatggccatcctgctttcccaggtc
tctactgcctgtctgcactgtgagagaactctgcagcaggatgactgcagggtggttctg
gccaagcaggagatcaacagactgttggagactctgcagaaacagcagcagcagttcact
gagctggccgaccacatccagctagacgctggtatccccgtcaccttcaccaaggacaac
cgggtccacattggtccaaagatggagatccgggtggtgaccctgggactggatagtgca
gggaaaaccaccatcctcttcaagctgaaacaggacgagtttatgcagcccatccctacc
ataggttttaatgtggagacagtggagtataagaatctcaagttcaccatctgggatgtt
ggtgggaaacataagctacgacctctctggaagcactattacctgaacacacaagcggtg
gtgtttgtgattgacagctgtcacagagacaggctgatggaggcccacagtgagctggcg
aaactgctgactgagaaagagctgagagacgccctgctgctcatcttcgccaacaaacag
gatgtccccggggctgagtcagtggaggagatgacggagcttctgagccttcacaagctg
tgctgtgggaggagctggcacatccaaggctgtgacgcccgcagcggcacagggctctac
gagggcctggactggctgtcccgacagctggtggctgcaggcgtactggacgtggcctaa
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