Oncorhynchus tshawytscha (Chinook salmon): 112214511
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Entry
112214511 CDS
T05605
Symbol
col4a6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04510
Focal adhesion
otw04512
ECM-receptor interaction
otw04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
112214511 (col4a6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
112214511 (col4a6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
112214511 (col4a6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
otw04147
]
112214511 (col4a6)
00536 Glycosaminoglycan binding proteins [BR:
otw00536
]
112214511 (col4a6)
Exosome [BR:
otw04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
112214511 (col4a6)
Glycosaminoglycan binding proteins [BR:
otw00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
112214511 (col4a6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
112214511
NCBI-ProteinID:
XP_042154137
LinkDB
All DBs
Position
LG15:17015782..17190380
Genome browser
AA seq
1693 aa
AA seq
DB search
MKFWICVLAVSWAVEATLGGTTGEPCNGLDCSGGCNCNPEKGSRGRPGALGPVGPSGPEG
FPGDQGPSGPKGEKGHVGLGGPSGLKGEKGPMGVPGFPGTDGVPGHPGADGGRGLPGADG
CNGTQGEPGPRTLNSGIPGAPGLSGPTGPKGQKGEPVYVGLSGGVPGPDGVPGPRGPDGG
PGDFGPRGPDGFLGAPGPPGPPGPVGSPSLGFQGEPGDKGDVGPQGDPGRPLVNGVVEFV
GFPKGDKGPKGEGGYKGVRGPTGRPGPPGPFGFPGEVGESGILGYPGGRGPPGFNGPPGS
PGRQGFTGSPGFPGQPGYRGPKGDQGEQGPPGPPIYTDAQGMTVQGAPGDNGVDGLPGQP
GDAGAPGFPGQPGRPGDSFGDGRGSSPGFPGTPGPKGERGNPGRQSYGPEGQPGGQGLPG
TPGPPGPPGRSVANIQTDLFDNLPGMPGRPGAQGPPGASGYKGPKGELGDCNCLGEGTSG
GVGPPGAPGSDGRPGGFGRKGESGDPGIPGFGGQPGTPGRAGERGFFGRKGEKGASFYPS
FSRGIKGELGALGPQGPPGDMGRPGRDGLPGFPGQPGPPADVDGYGTVGERGFPGFSGAK
GRAGEPGENGIGYQGTVGTRGLPGDPGFTGLPGQPGLPGPPGDSCGQEGVNDAEGGLTVP
CRLPGEDGEPGYPGIPGRTGPKGEPGFPGGPGRPGFDGGKGERGDPGFGGQPGPQGFPGP
RGDAGVPGIPGEGRPGAPGKNGFLGRPGEKGQPGEVLGASTGLPGSPGFPGGPGDKGERG
ASGPPGGPGFDGRSGVSGAKGERGTEGYPGTPGLPGLPGEGRPGGFPGPAGPAGSRGLTG
PPGCQGYPGVKGARGDAGFPGPAGMKGQPGEPGGDGSPGLRGLPGPPSPGGRDGIPGGPG
RKGESGYPGLVGFPGMPGNPGRPGGPGGKGAPGFSGRDGQPGDFGAPGPKGDRGNAGPPG
APSLPVRVEYIEKGQMGDNGANGLPGFPGPRGDKGFPGLPGRQGLPGLPGYADRAKGEQG
LPGIPGRPAGPGYPGPKGSPGIIGFPGMPGPRGDDGEPGFPGNPGVLGQPGAKGERGDSS
GYPGGPGAKGEAGTPGYSGNPGAKGAPGDNGFAGGPGFNGQKGAPGDQGIPGQMGTPGFT
GAKGLNGYPGGRGLDGTPGRSGFPGTPGEKGLPGSPGLDGLNGLAGPKGLPGTPGYSEGG
RPGTPGAAGLKGERGSSIPGGPGYNGEKGARGESGGPGVTGFPGLPGLRGETIISNIPGP
LGDPGLPGIDGEEGYRGPPGPPGPPGPGTAQGDRGDSGLSGIPGTPGNRGDPGGPGGPGR
DGNPGFKGERGDSGYSGASGQMGFPGDPGYYGGKGPKGRRGDTGRKGPQGITFPRPDIPT
PYGDMGDPGTNGTPGSVGEAGNPGMPGRGGPKGRPGAVGKLGRNGGSGLDGPLGDSGPPG
FPGPTGSQGLPGKPGLQGPPGSVARSRSIGYTLVKHSQNNQVPMCPQGMAQLWEGYSLLY
VEGQEKAHNQDLGMAGSCLPRFSTVPFLYCTPNEICYYASRNDKSYWLSTTAPIPMMPVG
EEAISQYISRCSVCEAYSQPVAVHSQDLTIPTCPAGWRSLWIGYSFLMHTAAGAEGGGQS
LSSPGSCLEDFRATPFIECNGAKGTCHYFANKYSFWLTTVEPNREFDPPPMDTLKGGNQR
SRVSRCQVCSKIL
NT seq
5082 nt
NT seq
+upstream
nt +downstream
nt
atgaaattctggatttgtgtactcgctgtcagctgggcagtagaagcgacactcgggggg
acgacaggagaaccgtgtaatgggttggactgtagtgggggatgcaactgtaatccagag
aaaggcagcagggggcgtccaggggccttggggccagtaggacccagtggaccagagggc
ttcccaggtgaccaagggccttcagggcccaaaggagaaaagggtcatgttggactcggg
ggcccctctgggctgaaaggagaaaaggggcctatgggcgtaccagggttcccaggaacc
gacggagtcccaggtcacccaggtgcggacggtggcaggggtctacccggagcagacggg
tgcaacggtacccagggagaaccaggtcccagaactctaaacagtggaatacctggagct
ccaggactctctggtcccactggtcctaaaggacagaagggagagcctgtatacgttgga
ctcagtgggggagttcctggaccggatggtgtacctggtcctagaggtccagacggaggt
cccggtgactttggccctcgaggtcctgatggattcctgggtgctccaggcccccccggt
ccccctggccctgtagggagccccagtctagggtttcagggggagccaggagacaagggc
gatgtgggcccgcagggagacccaggcaggcccttggtcaatggagtggtggagtttgtg
ggctttcctaaaggagacaaaggacctaagggggaagggggttacaaaggagtgcgtgga
ccaactggtagacccggcccacctggtcctttcggctttcctggcgaggtgggagagagt
ggaattttggggtatccagggggacggggtcctcctggttttaacgggcctcccggatct
ccaggaagacagggattcacaggaagtccagggttccccggccaaccaggctacagagga
cctaagggtgaccagggagaacaggggcctcccggacccccgatctacactgacgcacaa
gggatgactgttcaaggagcaccaggtgacaacggcgtcgacggcctccctggccaacca
ggggacgcaggagctccagggtttccaggacaaccaggacgaccaggcgactccttcggc
gatggtcgcggaagcagcccagggttccctggtacaccgggtcctaagggagagaggggt
aacccaggcagacagagctatggtcctgagggccaaccaggaggacaaggcttaccagga
acccctggaccacccggaccaccaggcagatctgtagccaacatccaaaccgacttgttc
gacaatctaccaggaatgccaggacgaccaggagcccagggaccacctggagccagtgga
tataagggacccaaaggggagctgggtgactgtaactgcctgggagaaggcacctcgggt
ggggtggggccaccgggtgctcctgggtctgatggaagacctggggggttcggacgtaaa
ggcgagagtggagaccctggcatacccggtttcggaggacaaccaggaacacctggtcgt
gcgggtgagaggggtttctttgggcgtaaaggagagaagggggcctccttctacccgtcg
ttcagccgggggatcaagggtgaactgggggccctgggtcctcagggcccccctggagac
atgggccgacccgggagagatggactgcctgggttccctggacagcctgggcctcctgct
gatgtcgatggctacggaaccgttggagagagaggtttcccagggttctcgggggccaaa
ggtcgcgcgggtgaaccaggagagaatgggattggctaccagggtaccgtcggtacccgc
gggttgccaggcgacccgggcttcaccgggttaccagggcaacctggtttacctggcccg
ccaggtgacagctgtgggcaggagggggttaatgacgcagagggagggttgacggtccct
tgtcgtctacctggcgaggacggagaacccggctacccaggaatacctggaagaacaggt
cccaagggcgagccaggtttcccagggggtcccggtcggcccggctttgatggagggaag
ggagagaggggagaccctggctttggaggtcagcctggaccacaaggtttccctggcccc
agaggagatgcgggcgtcccaggtatcccaggcgagggccgtccaggggccccagggaaa
aacgggttcctggggaggccgggggaaaaggggcagccgggggaggttctgggggcctca
acaggtctccctggatcacctgggtttcccggaggaccaggagacaagggagagcgagga
gcatcgggaccacctggaggaccaggttttgacgggcggtccggtgtttccggcgctaag
ggtgagcgtggtaccgaaggctaccccggaactccaggtcttcctggacttcccggagag
ggcagaccgggtggatttcccggtcctgccggaccagccggaagcagaggattaaccgga
cctccaggctgtcaaggctaccccggtgtgaagggagccagaggtgatgcaggctttcca
ggcccagctgggatgaagggacaaccaggagaaccaggaggcgatggctctccaggactc
aggggtcttccaggaccaccgagccccgggggaagagacggcatccctgggggaccagga
agaaagggcgagagcggttaccccggactggtgggtttccccggaatgccaggtaaccct
ggaagacctggaggtcccggagggaaaggagctcccggattctcaggaagagacggtcag
cccggagatttcggagcgccgggacctaaaggtgacagaggtaacgctggtccacccggc
gcaccctctctgcccgtcagagttgagtacattgagaagggacagatgggcgacaatggt
gccaacggtctacccggtttccctggacctagaggtgacaagggtttcccagggctgcct
ggtcgacagggtttgcccgggctgcctggttatgctgacagggctaaaggagaacaagga
cttcctggtatccccggacgcccagccgggccaggctacccagggcctaaaggatctccc
ggtatcatcggcttccctggcatgcctggacctaggggtgacgatggcgaacctggtttc
cctggaaaccccggagtccttggtcagccaggtgccaaaggtgagagaggtgactcgtcc
ggctaccccggaggtcccggagctaaaggtgaggccggaacccctggttactcaggcaac
ccaggtgctaaaggagcccccggggacaacggtttcgcaggcggccctgggttcaacgga
cagaagggagcaccgggagatcaaggaatacccggacaaatgggtacccctggtttcacc
ggcgctaagggtctgaacggatacccaggaggaagaggtctagacgggacacctggacgc
tccggcttccctggaacacctggagagaaaggtctgccgggatctcctggtcttgatggg
ctcaacggactggccggacccaagggtctaccaggaaccccaggttatagtgaggggggt
cgtcccggcactcctggagcagccggtctgaagggagagaggggctcctccatcccaggt
ggacctgggtacaacggagagaagggagctagaggagagtcagggggtcctggtgtgacg
ggcttcccaggactgcctggtcttcgcggggagacgatcatttctaatatccctggacca
ctgggagaccctggcctgccaggaatcgatggagaagaaggttaccgtggtcctccaggc
cccccaggcccaccggggcccggtacagcccaaggggacagaggcgactctgggctctct
ggcatccctggtacccctggtaaccgtggagaccctgggggtccaggtggcccaggacgg
gacgggaaccctggattcaaaggagagagaggtgactctgggtacagtggagcatcagga
caaatgggcttccctggagatccaggatactacggtgggaaaggacccaaaggaaggaga
ggtgatactggtcgtaagggaccccaaggtataactttccccaggccggacattccgaca
ccctatggagacatgggagaccccgggaccaacggaactccagggtccgtgggagaagca
ggcaatcccggcatgccaggcagggggggtcctaaaggcaggcccggcgcggtagggaag
ctggggaggaacggagggtcaggcttggacggacctctgggagactctggtcctcctggt
ttccctggacctaccgggtcacaaggtctgcccggtaagcctggactgcagggtccccca
ggtagtgtggcgcgcagcaggagtattggctacactctggtgaagcacagtcagaacaac
caggtgcccatgtgtcctcagggcatggctcagctctgggaaggatacagtctgctgtat
gttgaggggcaggagaaggcccataaccaggaccttggtatggcaggctcctgccttccc
cgtttcagcactgtcccgttcctgtactgcacgcccaacgagatctgctactacgccagc
cgcaacgacaagtcctattggctgtccaccacggcacccatccccatgatgccggtggga
gaggaggctatcagccagtacatcagcaggtgctccgtgtgcgaggcctactcccagcct
gtagctgtccactcacaggacctcaccatccccacctgccctgccggctggaggtccctc
tggatcgggtactcctttctcatgcacactgctgccggggctgagggcggcggtcagtcc
ctgtcctctccagggtcctgtctggaagacttccgcgccacgcccttcattgagtgtaat
ggggccaagggcacctgccactactttgccaacaagtacagcttctggctgaccacggtt
gagcctaaccgggagttcgacccccctccgatggacacactgaagggaggcaaccaacgc
agccgagtcagtcgctgtcaagtctgcagcaagatcttgtag
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