Oncorhynchus tshawytscha (Chinook salmon): 112214541
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Entry
112214541 CDS
T05605
Symbol
sox19b
Name
(RefSeq) transcription factor Sox-19b
KO
K16796
transcription factor SOX2 (SOX group B)
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112214541 (sox19b)
Transcription factors [BR:
otw03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
112214541 (sox19b)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
HMG_WDHD1
SOXp
Motif
Other DBs
NCBI-GeneID:
112214541
NCBI-ProteinID:
XP_024229124
UniProt:
A0AAZ3SWS2
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Position
LG15:complement(18308752..18314635)
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AA seq
289 aa
AA seq
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MYNMMEHELKTSGQQQSHQTSMSPVTGNSHPGSKSLCPPGGDPMDKVKRPMNAFMVWSRG
QRRKMAQENPKMHNSEISKRLGAEWKLLTDAEKRPFIDEAKRLRAVHMKDYPDYKYKPRR
KSKPLLKKDNQMGKYPLSAGNLLAAAQGQGGSPRMESYGWGPAGGYAGMQSEALGYTQQL
HRYDLSALQYPQAMTAAQTYMNGANTYSPMSYSSSHQQPNPVMSMVKPEPVSHSPTGGPN
HHRGPLQGDLRDMISMYIPGGDTTDPVSQRGGYSVQQHYLSGTVPLTHI
NT seq
870 nt
NT seq
+upstream
nt +downstream
nt
atgtataacatgatggaacacgagttgaagacctctgggcaacagcagtcgcaccaaacc
tccatgtctccggtcaccggcaactctcacccggggtccaaatccctgtgtcctccgggc
ggggaccccatggacaaggtcaaaagacccatgaacgcattcatggtctggtctaggggc
cagcgccgcaagatggcccaggagaaccccaagatgcacaactctgagatcagcaagcgg
ctgggcgcggagtggaagctactgactgatgctgagaagcggccattcattgacgaagca
aagcgcctcagggcggtgcacatgaaggattaccccgattacaagtacaaaccacgccgt
aaatccaagcccctgctcaagaaggacaaccagatggggaagtaccctctctctgccggg
aacctgctggccgccgcgcagggccaaggtgggagccccaggatggagagttacgggtgg
ggcccggcgggaggttacgccgggatgcagagcgaggccctgggctacactcagcagctg
caccgctacgacctgtccgcgctccagtacccccaggccatgaccgcagcacagacgtat
atgaacggcgccaacacttacagccccatgtcttacagcagcagccaccagcagcccaac
ccagtcatgtccatggtgaagccagagccagtgtcgcactccccgacgggtggacctaac
caccaccgcgggcctctccagggggacctgcgggatatgatcagtatgtatatccccgga
ggggacaccactgacccggtctcccagagaggcggctacagcgtccagcaacactatctc
agtgggactgtgcctctcactcatatctag
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