Oncorhynchus tshawytscha (Chinook salmon): 112214545
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Entry
112214545 CDS
T05605
Name
(RefSeq) SH3 domain and tetratricopeptide repeat-containing protein 1
KO
K24313
SH3 domain and tetratricopeptide repeat-containing protein
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112214545
Membrane trafficking [BR:
otw04131
]
Protein recycling
Rab GTPases and associated proteins
Rab11 associated proteins
112214545
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TPR_12
TPR_2
TPR_1
TPR_7
TPR_8
TPR_10
SH3_1
SH3_9
TPR_4
Motif
Other DBs
NCBI-GeneID:
112214545
NCBI-ProteinID:
XP_024229131
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All DBs
Position
LG15:complement(18426035..18450020)
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AA seq
1361 aa
AA seq
DB search
MSNAEQEVEPVPVAVGNGVDTSRRYRRKLSADDHKHHHHDPVKIETITRSKKMERSFSRE
ASSVRGTMSTSEDSFPTALPMLLAIVEGPDRHPADEGSQEVLRGKLCLLEADSAEVNALF
TELSARLVTINSEENIIFVAFKTFEEIWKFTTYYTMGFLGQCMENLLLDQDFWLSSMDQK
NVGIEISIQEDTLNLMYKGILMQEGSFFASCSSTQMFDSSTSGSDLYLEQGDIALFEPPF
LGSGWTVLSLGDGARGTKPKPALEPVIPFHQWFLKSCAENILVGSGKPACDFLCQFATGS
CIATMEYDAGGPDELSLEQGDHILIVGLLVSCFDWFTGRLERTGEVGLVMTTLVKPADDT
LCESADIFLDQEERLFFNLKEEQIKEETIALLKKISQNDVGSVYKLDLIDQPDSPKEPTQ
NGSQGNMDAHQQAELKRKIEEILQEKKEKVPCATVMTNGSLEDHSVSSKTTLPSGPHFTV
HPVEEGTITNQEKLLPLLSFLGGSDYKPDFGTLYGQTPELLLATFNGHSDDIDELVAYLG
IARETARKKRLHWSQSRLCLLLGKLCAGSSKFSQARVYFEEALSIPRDGFTDMLMLANIY
VNLAVIYLMQKNTEKYFALSERIAALLMGIPDCVSTVEKDSEVLKFILKKAVLAHNKMAE
ARACFLLAKLHWRRGEGADAVPFLERLLVLSAEPAGVRSVRPSHGYLSLGRLYSQLSLPH
LCVSSSRRATMHPSARLADCLNGMGLVLENTTRLYGIRKQEDTIPAQVALYLSRSLSFTG
ELAGVGGNGDHTLSQALTLCLSQLFQKHGKLGRAVRSMHTLIDDHCGPSSSSGATSSPER
ISALVWLAWLHICDSQPEVSLDVLDSVLASMPEHCTTPQEGLVHNMRGVALRCTGDLRRA
AESYQAAIYVCEEFEDRANWAVAQANLGLLSLKAGAKGLAERHLTEAVELFSELGGEEHE
VNFITVLLELGQHCVNQRFLERGKIYFEWALLMAIKSNHLDSQLSATRRLCHLYGAVCSD
EAQCIIYNEHQLAILATRGDRGQEGEVLETISQLYLSLGTERARRSALDYTKRSLGIFID
LGRKEKEAYAWLQAGKIYQMLGQTELVDLYVQVAQDVGLSTGDTHFILQLLEAAGDVFFN
LNQEREKAVCFYRDRALPIAVRTSSTEARLRLSNKLVELLLQLKLYGEAVEYAQAALDIS
VTLGNRLNERVAFHRLATLYHCLGQFELAEHYYLKTLSLCPTPLEFDEETLYYVRVYQTL
GDIIFYDLKDPYDAAGYYHLALAAAMDLGNKKSQLQLCTRLATIYHNFLVDRELSLFFYQ
KARAFASDLNVRRINLSPDQNFSSMSQYKSNRVSTQEPTIK
NT seq
4086 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaatgcggaacaggaggtagaaccggtcccggtggcggtgggtaacggagttgac
acgagtcgccgttaccggagaaagctctcagcagatgaccacaagcatcatcaccatgat
ccggtaaaaattgagactatcacccgaagtaaaaaaatggagaggtcattctccagagaa
gctagcagtgtaaggggaaccatgtcaacgtctgaagacagcttcccaacagctctaccc
atgttgctggccatcgtggaggggcccgacaggcaccctgcagacgaggggtctcaggaa
gtgctgcgggggaaactctgcctcctggaggccgacagcgcggaggtcaacgctctcttt
acggaactctctgccaggctggtcaccatcaacagtgaagaaaacattatattcgtcgca
ttcaaaacattcgaagagatatggaagttcaccacatattacacaatgggctttctgggt
cagtgcatggagaacctgctcctagaccaggatttctggttgagctctatggaccagaag
aacgtgggcatagagatctctatccaagaggacactctcaacctaatgtacaaaggcatt
ctcatgcaagagggttccttcttcgccagctgcagttccacccagatgtttgacagctcc
acctctggtagtgacctctacctggagcagggggacatagccctgttcgagcccccgttc
ttggggtcggggtggactgtactgtccctgggggatggggcccgggggaccaagcccaaa
ccggccctggagcccgtcatacccttccaccaatggttcttgaaatcctgtgcggagaac
atcttagttggtagtggcaagccagcatgtgacttcctctgccagtttgccacaggctcc
tgcattgccactatggagtatgacgcaggaggaccagatgagctgagcctggagcagggt
gatcacatcctcattgtgggcctgttggtgtcttgctttgattggttcactggcaggctg
gagaggacaggagaggtgggactggtgatgacaacactggtcaagccagctgatgatacc
ctttgtgagtcggcggacatattcctagaccaagaagaaaggttattttttaacctgaaa
gaagagcagatcaaagaagaaactattgccttgctgaagaaaatctcccagaatgatgtt
ggatccgtctacaaacttgatctgattgatcaaccagattctccaaaggaaccaactcaa
aatggttcccaaggaaacatggatgctcaccaacaagcagaactgaagaggaagatagaa
gagattctacaagaaaagaaggagaaagtgccttgtgcgactgtgatgacaaacggatct
ctggaggaccacagtgtgtcctctaagactacattacccagtgggcctcacttcaccgtc
cacccagtagaggaaggcaccatcaccaaccaagagaaactccttcctcttctatccttt
ctgggcggctctgactacaagccagattttggcaccctctacggacaaaccccagaactg
ctccttgccactttcaacggccactcggacgacattgacgaattggtggcatacttaggc
atagccagggaaacggccaggaagaagcgtctccattggtcgcagagccgcctctgtttg
cttttggggaaactctgcgcgggaagttcaaaattctcccaagctcgagtctacttcgag
gaggccctcagcatccctcgagatggattcacggacatgctaatgctagctaacatctac
gtaaacctagctgtgatctatctcatgcaaaaaaacacagagaagtactttgctttgtca
gagcggattgctgcattgcttatgggtatccctgactgcgtctctactgtagaaaaagac
tctgaagttctcaagttcatcctgaagaaagcggttctcgctcataacaagatggctgaa
gcacgtgcttgtttccttctagcaaagctccactggaggcgaggcgagggggcggacgct
gtcccgttcttggagagacttctggttctctcggcagagccagcaggtgtccggagcgtc
aggcccagccacggctacctgagcctggggagactgtacagccagctctccctcccccat
ctctgtgtcagctcaagcaggagagccacaatgcatccgtccgctaggctagccgattgt
ctgaatggaatggggctagtgctggagaacacaaccagactctatgggatccggaagcag
gaagacaccattcccgctcaagtggctctgtatctgagccggtcgctctctttcactggg
gaattagctggagtcggtggcaatggtgaccacactctaagccaggcactcacactctgt
ctatcccaactgtttcagaaacacgggaaactaggacgcgcggtgcgctccatgcacact
ctcatagacgatcattgcgggccgtcatcatcatcgggcgccactagcagccctgaacgt
atcagcgccctcgtgtggctagcctggctgcacatctgtgacagccaaccggaggtatca
ctagatgttctagactcagtgctggcctccatgccagaacactgcactactccacaggaa
ggattggtccacaacatgaggggtgtggcccttcgatgcacgggagacctgcggagggcg
gcagaaagctaccaggcggccatttatgtgtgtgaggagtttgaggacagggccaactgg
gcggtcgcgcaggctaacctggggttgctgagtctgaaggctggggctaagggtctggcg
gagaggcatctcacggaagccgtggagctgttctcagagctgggtggagaggagcatgag
gtgaactttataacagtgctgctggagctgggacaacactgtgtgaaccagagattcctg
gaaagaggaaagatctactttgagtgggctctgctgatggccattaagtcaaaccattta
gacagtcagttaagtgcgacgcggcgtctgtgccacctgtacggagctgtatgttctgac
gaagctcagtgcataatctacaacgaacatcagcttgccatactggcgacccggggagac
aggggacaggagggggaggtgctggagaccatcagccagctatacctcagtctggggaca
gagagggctaggcggtcggctctggactacaccaagcgtagcctgggtatctttatcgac
ctgggccggaaggaaaaggaggcatatgcctggctgcaggctgggaagatataccaaatg
ctgggccaaaccgaactggtggacctctatgtacaggtggcccaagatgtgggcctgagt
acaggagacacacactttatcctacagctgctggaggcagcaggggatgtcttcttcaac
ctcaaccaggagagagagaaggctgtctgcttctatagggaccgtgccctgcccatcgct
gtgaggaccagcagtacagaggccagactaaggctgtctaacaagctggtggagctgcta
ctgcaactgaagctgtatggggaggccgtggagtacgcccaggccgccctggacatcagt
gttacattgggaaatcgtctaaatgagcgcgtggccttccaccggttggccaccctgtac
cactgtctgggtcagtttgaactggctgaacactactacctgaagaccctctccctctgc
cccacgcccttggagtttgatgaggaaaccctgtactacgtacgagtctatcagacgcta
ggggacatcatcttctatgacctaaaggacccctacgatgccgcggggtactaccacctg
gcgctggcagcagccatggacctcggcaacaagaagtcccagctccagctttgcacacga
ttggctacgatctaccacaactttctggttgaccgggagctctcactcttcttctaccag
aaagcgcgagcgttcgcctcagacctcaatgtacgccgcatcaacctctcgcccgaccag
aacttcagtagtatgtcacagtacaagtccaatagggttagcactcaggaaccaacaatt
aagtaa
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