Oncorhynchus tshawytscha (Chinook salmon): 112214573
Help
Entry
112214573 CDS
T05605
Symbol
arhgef40
Name
(RefSeq) puratrophin-1 isoform X2
KO
K24316
Rho guanine nucleotide exchange factor 40
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112214573 (arhgef40)
Membrane trafficking [BR:
otw04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
112214573 (arhgef40)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RhoGEF
DHC_N2
DUF6586
IQ_SEC7_PH
Motif
Other DBs
NCBI-GeneID:
112214573
NCBI-ProteinID:
XP_024229189
LinkDB
All DBs
Position
LG15:complement(19222748..19260083)
Genome browser
AA seq
1592 aa
AA seq
DB search
MADHPTSVSDHTTDLTPVVGLGLGGWGGSSSGEPDSCSWDEEDDDLPPDSVDAEAVLPRR
RCSEDGLGRTTRHHQMAGDGDYVELLEPRGGPDGGTDPRQRYLEMHGICKTKTLPLCRRS
KAIKLRRGKAWGYGRLDAAGGSRGVLGGKRDSVTHRGDWLPPRPLPRVIDVGRARRSESY
PSSLQNSDEGEKQALGKDPEGLGSQGLYFDGPSKERRPGVGREREGSGCNVTQPCRDSHG
SNSLVASETTNPKAAHVVEGQLDQSSRSESVFEDTDKSLSGDSDTMPTTDTRGSGENVAR
PLIDIPGNGENVDSPLADGSETQKGRHSTSDSCVPDKTADSTEHRGTERSLSRPGTDADP
KGATTPEERAEGKTEEIGVCPRGKEVKTGGFRAPRRKRKGRGGKGKAKSGCRGNQKTRDQ
AGSKPPSKTPQHGPAISSTTNLPITTTNLSEATQQPEAADKEVTPVNEGQEKAEIGESNT
ENQVVQPEVSPDTTTSQSGTSLSNHSTEELGAETSPDLSNGLSPKAPPLLRELDTELLQS
GKLMLTGTVDRLGRAVVVTETHLPEDGCRADEMGRVLACYHRITRSSAKERGLTVIVDSR
QSPPSALCLAALKQLQAVVPGGLGSVLILVEEQHQESSTHSLDGVEVHTVRGTGVLQQYI
DRQQLPLEMDGDYKHCHSDWLAFRLSVESLTECCESALSLLEDALQSMDTAPLPDCIKTV
PLSVEKHRQLMTSILVDQRLTELQRKGGAWLAGLANGTSGLAKRSPDCRAALAATSNLYD
SVDDSLHRLVQVSNQRGSDLEALGRLAAMVDKLEKCEREIEQIQDQLEDYREPPISLSRL
SLKQQKFKTFRESANELHTETLAVLGDLESWSELDWGGLIEVQVRVPPVRERLRDMSHCL
SDCWTTLDNTQRLLSTLTEANQWCDVISSTSPSPSTPLSSLPPIPPSRFQDARALALELG
GGALLDLWSQTLERYQRTVAQVKPRLLQQAERGQNQGQARPKTPSASSLWDLMGPEGEGD
WGVGAGGGEGGLQSWGSLASLFRPQTCSTLKIGEEKGNKKEGTGGGGGGAGGGKFLQNLL
HPAKKSPTEAPLPPKPPRKRHPSFDLQALLAPRRGPATARPVEPPVGAASRNSPLTWLGR
RALTDPVIAAGMAAAVPGWREGGGGGIGGGIGGVQGGSGVLIRGVEVSSKEVVDYTGTPR
QHVLLSRAERETGGERQGTTTAQRMLSSERQYVAVLKGVEETYLPLLEGPDTPSSLRGKA
DLLFPKWASLSSFHSQNLLPAMEGALLQSLLQQDLFSKYREEFLQYSHYIRIKPELDSPL
VTQAADFFKLRLPATPPLSPLSFPHCLQAPTLRLEQYCDALEELGGLNPASDSSLSVLRH
VHRHGEDLRASDLIVGCPVPVAERGELVRQGELLVCGGTRRKKTGVRSVFLYQHLIIFTK
QKSPGPGRTAYSFKHSIKTGEMGLTQSVGEEGVRFEVWVRQAPRIRDCLTLQCQSGEGRA
AWTHDIAQLLWTHAIHNTELCLKETMCIGVSSKILLDATGAPVTSELDSIYNLNDRVHSS
CSDSSSVGSQKEGGSPASGRGQTQNQSPSTAV
NT seq
4779 nt
NT seq
+upstream
nt +downstream
nt
atggctgaccacccaacctccgtctccgaccacaccaccgacctcaccccggtggtgggc
ctcggcctgggtggctgggggggctcctcctctggagaaccagactcctgttcctgggac
gaagaagacgatgacctacctccagacagtgtagatgcagaggccgttctaccccgccga
cggtgcagcgaggatggtttagggaggacgacgaggcatcaccaaatggctggtgatggg
gactacgtggaactcctggagcccagggggggtccggacggcggcacagaccccaggcag
aggtacctggagatgcatgggatctgtaagaccaagaccctgccgctgtgtaggaggagc
aaggctatcaagctccgcagagggaaggcctgggggtacgggcgactggacgcagccggg
ggcagtaggggcgtcctggggggtaagagggactctgtgacccaccggggggactggtta
cccccccgccccctgcctagagttatcgatgtaggccgagcgagacggtctgagtcgtac
ccctcctcgcttcagaactctgacgaaggggagaaacaggccctcggaaaagacccagaa
ggcctaggaagccaggggctatattttgatggtccatccaaggagaggaggcccggggtg
ggcagggagagggagggcagtgggtgtaacgttacacaaccatgcagggacagccatgga
agtaacagtttggtagcaagcgagacaacaaatcccaaagcagcgcacgttgtagagggc
caattggatcaaagctctcgctctgaatctgtgtttgaggatactgataagtcactgagt
ggagacagcgacaccatgcccactacagacacacgaggaagtggggagaatgtggcgagg
ccattgattgatattccaggaaatggggagaatgtggacagcccgttagcagatggatct
gaaacccagaaaggaagacattccactagtgactcttgtgtaccagacaaaacagcagac
tcgacagaacacagagggacggaacgttctctctctcgacccggtactgacgctgaccca
aagggagcaacaactccagaagagagggctgaaggaaagacggaggagataggagtgtgt
cctcgaggaaaggaagtaaaaacgggaggattcagggcacccaggaggaagaggaaaggg
agagggggaaaggggaaggctaaaagtgggtgtcgtggcaaccagaagactcgagaccag
gccggttccaaaccaccaagtaaaacacctcagcatggtcccgccatctcctcgacaacc
aacctgccaatcactacaaccaacctatcagaggcaacacagcagcctgaggcggcggat
aaagaggtcacaccagtcaatgaaggacaagaaaaagctgagattggggaaagcaataca
gaaaaccaggttgtccaaccagaagtctcacctgacacaactactagccaatcaggcaca
tccttatctaaccactctacagaggagttaggggcagagacatctcctgacctatcaaat
ggcctatcacctaaagcccctcctctcctaagggaattggacacagaactcctccaatca
ggaaagctgatgttgacaggtacggtggacaggctgggacgggctgtggttgtcactgaa
acgcacctcccagaggacggttgccgtgcggacgagatgggccgtgtcttggcctgttat
cacaggatcacccgctcttctgctaaagagcgaggcctaacagtaatagtagacagtaga
caatctcctccctccgctctctgcctcgctgcactgaaacaattacaggctgtggtcccg
ggaggtcttggctctgtcctcattctggtggaggagcagcaccaggagtcatctacacac
agtctagatggagtagaggtgcacacggtgcgagggacaggggtccttcagcagtatata
gacaggcagcagctgcccctggagatggacggagactacaaacattgccactctgactgg
ctggccttcagactgagtgtggagagtctaactgagtgttgtgagagcgcactctctctg
ttggaggatgcactgcagtctatggacacagcaccactaccagactgtatcaagactgtt
cctttaagtgtggaaaaacacagacagctgatgacgagcatcctagtcgaccaacggctg
actgagctgcagcgcaagggtggggcctggctggcagggctggccaatggcacatcagga
ctggcaaagcggtccccagactgcagagctgctctggctgcgacctctaacctctatgac
agcgtggatgattccctccaccgcctcgtccaggtgtccaatcagaggggcagtgatctg
gaagccctcggacgattggctgccatggtggacaagctggaaaagtgcgagagggagata
gagcagatccaggatcagttggaagactacagggagcctcccatctctctcagcaggctc
tccctcaaacagcagaagttcaagactttcagagagtcggccaacgagctgcacactgag
accctggcggtccttggagatctggagagctggtctgagctggactgggggggactgata
gaggtgcaggtcagggtacccccggtcagagagagactcagagacatgtctcactgtctg
tctgactgctggacaacactggacaacacacagagactactgtccacactgaccgaggcc
aaccagtggtgcgacgtcatctcctccacctcaccctccccctccacccccctctcctcc
ctccctcccattccgccatctcgttttcaggacgcccgtgccttagccttggagctgggt
ggtggagctctcctggacctgtggtctcagacccttgagagataccaacgcactgtggcc
caggtcaaacccaggctgctgcagcaggcagagcgagggcagaaccagggccaggcccgg
cccaagaccccctccgcctccagtctgtgggacctgatggggcccgagggagagggagac
tggggtgtcggggccgggggaggggagggaggcctccagtcctgggggtccctggcttca
ctgtttcgcccacagacctgctccacactgaagataggagaggagaaagggaataagaag
gagggaacgggaggaggtggaggaggagcgggaggagggaaatttctgcagaatctgttg
catccggcaaagaagagccccacagaagcccctttgccccccaaaccccccaggaagcgt
caccccagcttcgacctccaggccctgctggccccccgtcggggccctgccaccgccagg
cctgtagagcctcctgtgggtgcagccagccgtaactcccccctcacctggctggggcgc
cgggccctcacagaccctgttatcgccgctgggatggcagccgccgtccccggatggaga
gagggaggaggaggagggattgggggaggaataggaggggtgcaggggggatcaggggtg
ctcatcagaggtgtagaggtgagcagcaaggaagtggtggactacaccgggacgccaaga
caacacgtgctgctgagccgagcggagagggagacgggaggggagaggcagggcaccacc
accgcacagaggatgctgagttcagagaggcagtacgtggctgtattaaagggggtggaa
gagacctacttgcccctcctggagggtccagacaccccctcctccctcagggggaaagca
gatctcctgttccccaaatgggccagcctcagctccttccactcacagaacctcctccca
gccatggagggagctctactgcagagtctgctgcaacaggacctcttcagtaaatacaga
gaggagtttctccagtactctcactacatcaggattaaaccagaattggactccccgttg
gttactcaagctgcggacttcttcaagctcagactcccggccacccctcctctctccccc
ctgtcgttcccccattgtctccaggcccctacactgagactggaacagtactgcgatgcc
ttggaagagctgggagggctaaaccctgcctccgactcctccctctccgtcctcagacac
gtccatcgccacggcgaggacctccgggccagcgacctaatcgtcgggtgtccggtccca
gtggcggagcgcggagagctggtgcgtcagggggagctgttggtgtgtggggggaccagg
aggaagaagacaggggtgaggagtgtgttcctctatcagcacctcatcatcttcaccaag
cagaagagtcccggcccaggacgcaccgcctacagcttcaaacacagcatcaagacgggt
gagatgggtctgacccagagtgtgggtgaggaaggggtgaggttcgaggtgtgggtgcgt
caggcccctcgtatccgggactgcctgaccctgcagtgtcagagtggagaggggagggca
gcctggacacacgacatcgctcagctcctctggactcacgctatacacaacacagagttg
tgtttgaaagagacaatgtgtatcggtgtgtctagtaagatactgctagatgccacagga
gcaccggtaacatctgaactcgactctatctacaatctgaatgacagagtccacagtagc
tgttcagactcttcctctgttggcagtcagaaggagggggggtccccagcctctgggagg
ggacaaacacagaaccagtctccttccactgcggtgtaa
DBGET
integrated database retrieval system
