Oncorhynchus tshawytscha (Chinook salmon): 112214881
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Entry
112214881 CDS
T05605
Name
(RefSeq) multiple PDZ domain protein isoform X1
KO
K06095
multiple PDZ domain protein
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
112214881
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Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
L27_2
MPDZ_u10
L27_1
Shufflon_N
Motif
Other DBs
NCBI-GeneID:
112214881
NCBI-ProteinID:
XP_042154258
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All DBs
Position
LG15:22744267..22811107
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AA seq
2109 aa
AA seq
DB search
MIETMDTQRALQAVERLQAKLKERGEVPTEEKLSLLKSVLQSPLFHQILALQKSVQLLKD
QGGGVTATFGGDLSECYTTAHANGSHLAYPESSTGTQINGKPSPEEFEHIIRSMAQGRYV
THMELVKPLSGGLGFSVVGLRSENRGELGIFVQEIQPGSVAHCDGNLKETDQILAIDGQP
LDQTVTHQQAIGILQRASERVQLTVARGPIPQLASPVVSRTPSAASTLSAHSSAAHWNHV
ETIELVNDGTGLGFGIVGGKNTGVIVKTILPGGIADQDGRLHSGDHILTIGDTDLYGMGS
EQVAQVLRQCGNRVKLVITRGPPEETSIVPKALPTVTEQQGYEEEEAESFDVGLTKNAQG
LGITIAGYVGDKNSEPSGIFVKSITKDSAVEQDGRIHVGDQIIAVDGMNIQGYTNQQAVE
VLRHTGQTVHLKLVRSGFCPEDIPPAVVPSVIVLPPTPGGRDPTLERTDVVDSTAQGEKQ
YQVLSGESDDSTVKDQLTKNTRDEAKLTEDEELELMKKWQETLGPSNKVVIAQVEKFSES
SGLGISLEANNGHHYIRSVLPEGPVGRCGKLISGDELLEVNGISLIGETHKEVVRILKEL
PVCVYMACCRPAPLLQSDRDSGQTGLDEFSTEPKIKIQGDLSSFLVPGGSEGAATRENVT
EETLGAPLAMWEMEIQDIELEKGESGLGFSILDYQDPMDPAKTVIVIRSLVPEGVAERDG
RLLPGDRLMFVNSTNLDNASLEEAVQALKGANIGMVHIGVAKPLPPYNEEDSPSSSSGIS
FFLSSTLLVKESDEEEPAEDHLFRAEPALIDSNEGDLTDERALEHRFSGNEDDTLQASMI
ALHGSTCSADMDYQTTLQSSTPKRSARLDLLTEHPLVTLFGLADDTEPFSPEEKPIVFPL
PRSIGGHALMVDDNALTSSNQYLAHHLTQMEPSDLSNSYSPYTDPEPGLNDLGEPVQSLH
FQVESTMAVEDIGEMEGLMKGDEPSVKQSKEEGDEVIITGSHFERTITVVKGNSSLGMTV
STIKDGLGMYIRSIIHGGSISRDGRLGVGDLILVINGESMANLTNTQARAMLRRHSLIGP
DLGSACAPEEDLCPFYVITYVPVEYLEEYKTSLEQPKDDICSDAPPAPIRGIPELPERED
GEGEESELQTATFSNWNQPMKVELKREAGKSLGISIVGGRGMGSRLSNGEVMRGIFIKHI
MADSPAGRNGTLKTGDRIVEVDGVDLSDASHEQAVEAIRRAGNPVVFLVQSIVHRPRPKS
RYSPTSSPVIEYSTALKRLPHHMCQSSTTDTNEERVARRNSDKEVECHSRLFLRLSPTNP
FTPTPFKPPKREAGKTLSTTPHLSLPVVPHVGETDTDTLTEIPDRPSQTEEEDKFGYRWK
NISQRYDSLPGLLHMIELEKGKTGLGLSLAGNRDRSRMSVFVVGIDPSGAAGKDGRVVVG
DELLEINGQILYGRSHQNASSIIKSAPSKVKIIFIRNTDALNQMAVGPVREHGDTLEPQT
ELETCSSIAPSAIDFDMFKYVQHVILLKEEGGFGITFSEDTKDGLVIQSITEKGPAGKDG
SIKSGDKLLAVEDKPVMGYTVDRVHSLLKKSKSSVKLTICTDKSSPLLPHCTGKATSLAS
IHRISMATLGQSESEPIRSSSRSSTPGTLASSDPVTCPIIPGCETTIDISKGRTGLGLSI
VGGCDTLLGTIIIHEVYEDGAASKDGRLWAGDQILEVNGIDLRVATHDEAINVLRQTPQR
VRLSVYRDEAQYKEEDLWDAFTVELNKKPGQGLGLSIVGRRNDTGVFVSDIVKGGVVESD
GRLMQGDQILSVNKEDVRNATQELVAELLKCGVGPIVMEVGRFKAGPFHSERRFSQNSQM
SETGSCKVTPQSLSASSGSLQVDCDSLQHTHQESLDHQEIRSVEFTKGPTDSLGISIAGG
VGSPLGDVPIFIAMINPTSLVVQTHKLKIGDIIVSICGTATDGMSHSQAVTLLKNATGTV
GLQVVAGSDTTVTGPFHEQTATGLSVSGLTATSIFHDDLGPPQYKTITLDRGPDGLGFSI
VGGFGSPHGDLPIYVKTVFGKGAASEDGHLKRGDQIMAVNEQSLEGVTHEDAVGILKRTK
GTITLTVLS
NT seq
6330 nt
NT seq
+upstream
nt +downstream
nt
atgattgagacaatggatacccagcgtgccttgcaggcagtggagcggctccaggccaag
ctgaaggagcggggggaggtccccactgaggagaagctaagcttgctcaagtcggtgctc
caaagccccctgttccaccagattctggccctgcagaagtctgtccagctcctcaaagac
caggggggtggtgtcacagcaacatttggcggtgacctgagtgaatgctacacaacagcc
catgccaatggcagtcatcttgcctacccagaatcctccactggtacacagatcaatggg
aagccgtctcctgaggagtttgagcacatcattcgctccatggctcaggggcgctacgtg
acacacatggagctggtgaagccgctgtctgggggcctaggcttcagcgtggttggtctg
aggagtgagaaccgcggggagctgggcatcttcgtccaggagatccagcccgggagcgtg
gcccactgcgatgggaatctgaaggagacagaccagatcttggccatagacggccagccc
ctggaccagacagtgacccaccagcaggccataggcatcctgcagagagcgtccgagcgt
gtgcagcttactgtggccagaggacccatccctcagctggccagccctgtggtgtcccgc
acgccctccgctgcgagcaccctgtctgcccactccagtgcggcccactggaatcatgtg
gagaccatcgagttggtcaacgacgggacaggcctgggctttggcattgtgggaggaaag
aacaccggtgtcattgtcaaaaccatcttgcctggaggcatcgctgatcaggatgggcgt
ctgcacagtggggaccacatcctcacaattggggacactgacctttatggcatgggcagt
gagcaggtggctcaggtcctgaggcagtgtggcaacagagtgaagctggtcatcactaga
ggccctccagaggagacctccatcgtcccaaaggcgctgcccactgtcacagagcaacag
ggctatgaggaagaggaggctgaatcgttcgacgtcgggctgaccaagaacgcccagggt
ctgggaatcactatcgccggctatgtgggggacaaaaattccgagccctctggtattttc
gtgaaaagtattactaaagacagtgcagtagagcaagatggccgcatccatgttggagac
cagatcatagccgtggacgggatgaatatccagggctacaccaaccagcaggccgtggag
gtgctgagacacacgggccagacggttcacctgaagctggtcagaagtggcttctgtcca
gaggacatcccacccgctgtggtgcccagtgtgatcgtacttccaccaaccccagggggc
cgagaccccacactggagagaacagatgttgtggactccaccgctcaaggtgagaaacag
taccaggtattgagtggggaatcggatgactccactgtgaaggatcagttaactaagaac
accagagacgaagcaaagttaacagaggatgaagagttggagctgatgaagaagtggcag
gagacgctcggccccagcaacaaagtagtgattgcccaggtggagaagttcagtgagagc
agtggtctgggcatcagtctggaggccaacaacgggcaccactacatccgctctgtcctg
cccgaggggccagtgggccgctgtgggaaactcatcagtggggatgaactgctcgaagtc
aatggaatatccctgattggtgagacccacaaggaagtggtgaggattctgaaggagctt
cctgtctgtgtctacatggcctgctgtaggcccgcccctctccttcagagtgacagggat
tctggccaaacagggttggatgaattttccactgaacctaaaattaagatacagggagac
ctcagcagtttcctggttcccggaggttccgagggggcggcaacaagggaaaatgtgacg
gaggagactctgggagctcctttggccatgtgggagatggaaatacaggacatcgagctg
gagaagggagagagtggactgggattcagcatcttggactaccaggacccaatggatccg
gccaagacagtgatcgtgattcgctctctggtgccagaaggagttgccgaacgggatggc
aggcttttgccaggcgatcggctcatgttcgtcaacagcaccaatctggacaacgccagt
ctggaggaagccgtccaggcactgaagggggccaacatcggcatggttcacattggggtg
gccaagccactgcctccatacaatgaagaggacagtccgtcgtcatcctctggaatcagt
ttttttttatcttcaacactgctggttaaagaaagcgatgaggaggagccagcggaggat
caccttttccgggcagagcctgcattgattgactccaatgagggagacctgaccgatgag
agggcattggagcatcgcttctctggcaatgaggatgacaccttacaggcatccatgatc
gccctgcacggcagcacctgcagcgccgatatggactaccagactaccttgcagtcctct
acacccaaacggagtgctcgcctggacttgttgactgagcatcccttggtgacgttgttc
ggccttgcggacgacactgaacccttctccccggaggagaagcccatcgttttccccctg
cccaggagtattggaggtcacgccctaatggttgacgataacgcactaactagctccaat
cagtacctggcgcatcacttaacccaaatggagccatcggatctgtcaaactcatacagt
ccgtacactgaccctgagcctggtttgaatgatttgggggagccggtgcagtctctccat
tttcaggtggagtccaccatggccgttgaggacataggggagatggaaggcttaatgaag
ggggatgagccatctgtaaagcagtccaaagaggaaggggatgaggttataatcactggg
agtcattttgaaaggacaatcactgttgtcaagggcaactccagtctcggaatgacagtg
agcacaatcaaggatggcttggggatgtacatccgcagcatcatccacggaggttccatc
agccgagacggccgtctgggagtgggggacctaatcctagtcatcaacggcgagtccatg
gccaacctgactaacacccaggcccgcgccatgctccggagacactccctcatcgggcca
gacttgggatctgcttgtgccccagaggaagatctgtgccccttttatgtcattacctat
gtccctgtggagtatctggaggagtataagactagcctggagcagcctaaagatgacatc
tgctctgatgcacctccggccccaataagaggaatcccagaacttcctgagcgggaggat
ggagagggagaggagagcgagttacagaccgccaccttcagtaactggaaccagcctatg
aaggtggagctcaaaagagaagcgggcaagtcccttggcatcagcattgtggggggcaga
gggatgggcagtcgccttagcaacggtgaggtgatgcggggcatcttcatcaaacacatc
atggcggacagccccgccggccgcaatggaaccctgaagactggagacaggattgttgag
gtggacggtgtggacctgagtgatgccagtcacgagcaggctgtggaggccatccgcagg
gcaggaaaccctgtagtgttcctggtccagagtatcgtccacaggcccaggcccaagtcc
cgctatagccccacttcatcaccagtcatagagtacagcaccgctttaaaacgcttgcct
catcacatgtgccagtcctcaaccacggacaccaacgaggagagagtggcgcggcgcaat
agtgacaaggaggttgagtgtcacagtagactattcctacgcctctccccaactaaccct
ttcactcctactccgtttaagccgccaaagcgggaagcgggaaagactttgtccaccact
cctcacctctctcttcctgtggttccccacgttggagagacagacacggatactctgaca
gagattcctgacagaccgtcccagacagaagaggaggataagtttggctacagatggaag
aacatcagtcagaggtacgacagcctcccagggcttctccacatgattgagctggagaag
gggaagactggcctgggccttagcctggctggcaaccgtgaccgctcccgcatgagcgtg
tttgtggtcgggatcgaccccagtggagccgccggcaaagacggtcgcgttgtggtcggg
gatgaactgttggagatcaacgggcagattctgtatgggcggagtcaccagaatgcctcc
tccatcattaaaagtgccccatcgaaggtcaagatcatattcatcaggaacacagatgct
ctcaaccagatggctgtgggaccagtgagggagcatggagacacactggagccccagaca
gagctggaaacatgttcttccattgcaccctcggcgatcgatttcgacatgttcaaatat
gtgcagcacgtcattctgctgaaggaggagggtggattcggcatcactttcagtgaggac
accaaggatgggcttgtgattcagagtataactgaaaaaggaccagcaggaaaggacggc
agcatcaaatctggagataaactcctggctgtggaggataagccagtgatgggctacact
gtggacagggtccactctttactgaagaagtccaaaagctcagtgaaattgactatctgc
acagacaagtcatcgccccttctccctcactgtactggtaaggcaaccagcctagccagc
attcatagaatctccatggctaccctgggccagtctgagtcagagccaatcaggagctct
agtcgctcatccactcctggcactctggcttcctctgaccctgtgacctgtcccatcatc
cccggctgtgagaccaccatagacatctccaagggtcgcacaggcctgggcctcagcatc
gtggggggctgtgacactctactggggaccatcatcattcacgaggtctatgaggacgga
gctgcctccaaggatgggagactttgggctggggaccagatcctggaggtgaatggcatt
gacctgcgcgtcgccactcatgatgaagctatcaacgtgctgcgccagacccctcagcgg
gtgcgtctcagtgtttacagggacgaggctcagtacaaggaggaggacctgtgggatgcc
ttcaccgtggagctgaacaagaagcccggccagggcctgggcctcagtatcgtggggaga
aggaacgacacaggggtgtttgtgtccgacatagtgaaagggggcgtggtggagagtgac
gggaggctgatgcagggagaccagatcctgtccgtcaacaaggaggacgtcagaaatgcc
acccaggagttagtggccgagctgctgaagtgtggtgtgggacccatagtgatggaggtg
ggcagatttaaagccgggcccttccactctgagaggaggttctcacagaacagtcagatg
agtgaaacaggcagctgcaaggtgacccctcagtctctgtcagcctcttctggaagcctc
caagtggactgtgacagcttacaacacacacatcaggagtcactggaccaccaggagatc
agaagtgttgaattcactaagggccccactgattccttgggcatcagtattgcgggtgga
gtgggcagtcccctgggtgatgtgcccatcttcatcgccatgataaaccctactagtctt
gttgtccagacacacaaactcaagatcggtgacattatcgtcagtatctgtgggactgct
actgacggtatgagccacagccaggccgtcaccctgctgaagaacgccaccggcaccgtt
gggcttcaggtggtagcagggagtgataccacagtgaccggcccctttcatgagcagacc
gctaccggactctcagtctcaggtcttactgctactagcatcttccacgatgacctggga
cctcctcaatataagaccatcacactggacagaggcccagacggactgggcttcagcatc
gttggtggcttcgggagcccacacggagacctgcccatttatgtgaaaaccgtgttcgga
aagggggcagcatcagaggacgggcatctgaagcgaggggatcagattatggctgttaac
gaacagagtctggagggggtcacccacgaggatgccgtgggcattctgaagaggaccaaa
ggaacaatcaccctgactgtgctttcctag
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integrated database retrieval system
