Oncorhynchus tshawytscha (Chinook salmon): 112214889
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Entry
112214889 CDS
T05605
Symbol
dennd4c
Name
(RefSeq) DENN domain-containing protein 4C
KO
K20163
DENN domain-containing protein 4
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112214889 (dennd4c)
Membrane trafficking [BR:
otw04131
]
Protein recycling
Rab GTPases and associated proteins
Other Rab GTPase associated proteins
112214889 (dennd4c)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DENN
uDENN
dDENN
PPR_2
DUF2464
PPR_3
PPR_long
PPR
CA109-like
Motif
Other DBs
NCBI-GeneID:
112214889
NCBI-ProteinID:
XP_042154321
LinkDB
All DBs
Position
LG15:complement(26409557..26473371)
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AA seq
1943 aa
AA seq
DB search
MIEDKGHRVTDYFVVAGLTDKSTPLEQDLSETKSSGPKAPITDLAVINKSAGETVPEGFT
CIESTYSAQQANLNHGSLKSPEIFLCYKRGHDKPPLIDIGVLYEGKERLIQGCEVIQATP
YGRCANVNNSSATSQRIFITLRRAPPVQPQNSLSVTDICVIVTSKGETPPHTFCKVDKNL
NCGMWGSSVFLCYKKSVSVSNSINYKAGLIFRYPEDDYESFPLSESVPLFCLPMGAKIEC
WTPNTRYPLPVFSTFVLTNSSGEKVYGAAIQFYEAYPIDLLSEKQKVQLGLLTTVEKKMI
PNRTVNTNKCICLLSRWPFFESFRKFLMFLYKLSVSGPHPLPIEKHISHFMHNVSFPSPQ
RPRILVQLSAHDTLMLAQPVCTPMPLSGADYSTLLINLGSENCATLLHFVLLESKILLHS
LRPAVLTGVAEAVVAMIFPFQWQCPYIPLCPLSLAGVLNAPCPFIVGVDSRYFDLYDPPP
DVVCVDLDTNTIYLSDEKKHSNWKNLPKKPCKSLFNSLTNLQHQLGIVRRTAQEGLAVEM
TPIEADFTWHKKMTSLEMEIQEALLRFMAHILKGYRSYLKPITQAPSEKATSADSLYDLQ
GFLKSRERAHQKFYSQLTKTQIFIRFIEECTFVSDKDTGLAFFDDCIEKLFPSDKGNDKG
TKVEGESSEDIKLMELDESQRSEHTVFVMPPEPPTTEDESDPPTRYSYKSFPRLRMDLFD
RPKEVIPALRSSTPGASLSSSPALLAKRTKQEIKLAYKMAKRFYSDPPLWAKCLFSHCYS
LWFICLPVGVRLVQSKSWAMQQAYNVLLKMRTSEVEVLDEVCYRVVMQLCGLYGQPVMAV
RVLVEMKKAGVHPNAITYGYYNKAVLEGPWPSWNRSGLFMWAKVRNVVRTVAQFKQALHR
MPATKGPTIITTVVSVSSDLLSHGSADHSSEVNGEDHTLFARSLIIGDATDNHCSTGGQS
DQGYGSKDELHQVQVDLAPSAAPLVDVDHRSKPKAQHNGGDIAGSVDSSVVVAEPTSPVE
AIPHVPSIVKLSTGGSFDTAMKRGETAPGKLFSLRSQSENVSLPEEGESTAPGGSGEAGP
AVQGQGQRQKAFSERSCSFSVESRAGMLMEKNGVDHIARRMGADARILADALSGCGTTQP
PTNPPSKALFKELESEEGRCPMLGKLSEEEGPVMDPTPLEEGLGKEEERMDGEDEMGLKL
EEEGDSGGRGDSSLPTLEMKEVDVGADPLSLLVSEHEELASVTSQELPHSLPAVVSRNLA
DEIEMYMSLRSPLGPKSSSMEFQQGGQGGDSSPDTAPVKQALERRSSLPVPPVKHPGGSS
GDSTPKRSPAAVTRSKTFAVMATRSRGVVASPRSSLTALVRSSQNGSLGSVINSISGMKM
DTLLSGPKMDVLKSGMKQAGNLASKVWGAVASAYSYSDDEDELAPGYRDRDSFPAGLDES
MLSGGGGGDSPTHRGPTQGLVSNGLTQSSTSLASSSSSSDTGRGPHSTLTPGRPGRGPDS
DQGSHHTSSSSIYQNCALEVLMSSCSLCRSCECLVYDEEIMAGWTADDSNLNTTCPFCRA
AFLPLLHVEFHDLRTNTAFYLKPSASGDSIHSASHQPTTTDSTVLGVGGAADTPPPDLIS
FPESSSEDPGEAPASQTATHKSLVPEPAQSDPLGLLEHQAGKRGTSLTRSNSVGGPLQSL
VSYQRQPGHGVSTTSLPCSLTEVDGLGQKRPDPMPVSVPYLSPLVLRKELETLLENEGDQ
VIYTHKFLSQHPIIFWNLVFYFCRLDLPSYLPGLILTSEHCNNGVQLPQTSLSQDSKQVY
VQLLWDNINLHQEPGDPLYQSWRTLLEKKATLAPTDHQETRTFLNSIVRSIQTNDVYGPI
NLLLREVKRHPEVKRQRGIYREILFLALVALGRENIDVEAFDREYRQAFDGLSTEQLKAL
HKIDRPPNSNVQWCLKCFGAPVI
NT seq
5832 nt
NT seq
+upstream
nt +downstream
nt
atgatcgaggacaagggtcaccgtgtgaccgactactttgtggtggccgggctgacggac
aagtccacgccactggagcaggacctgtcggagaccaagtccagcgggcccaaggcaccc
atcactgacctggctgtcatcaacaagtcagcgggcgagacggtgccggagggcttcacc
tgcatcgagagcacctacagcgcgcagcaggccaacctcaaccatggcagccttaagagc
cccgagatatttctctgctacaagaggggccacgacaagcccccgctcattgacatcggg
gtgttatatgaaggtaaggagcgtctcatccagggctgtgaggtaatccaggccacgccg
tatggccgctgtgccaacgtcaacaacagctctgccacctcgcagcgcatcttcattacc
ttacgccgcgcgccacccgtccagccccagaactccctgtccgtcaccgacatctgtgtc
atcgtcaccagcaagggcgagacgccgccacacaccttctgcaaggtggacaagaacctc
aactgtggcatgtggggctctagtgttttcctgtgctacaagaaatcagtgtcggtgtcc
aactccattaattacaaagccggcctcatcttccgctacccagaggatgactatgagtcc
ttccccctgtcggagtctgtgcccctgttctgcctccccatgggggctaagatcgaatgc
tggacccccaacacacgctaccctctccctgtcttctccacctttgtgttaaccaactcc
tctggggaaaaggtgtacggtgctgccatccagttctatgaggcctaccccatagatctc
ctcagtgagaagcagaaggtgcagttgggcctgctcaccaccgtggagaagaagatgatc
cccaaccggacagtcaacaccaacaagtgcatctgcctcctctcccgctggcccttcttc
gagtcgttccgcaagttcctcatgttcctctacaagctgtccgtctcgggcccccacccg
ctgcccatcgaaaagcacatctcccatttcatgcacaacgtgtccttcccctcacctcag
aggcccagaatcttggtccagctctctgcacacgacaccttgatgctcgcacagcctgtg
tgtactcctatgcctctcagtggtgcagactacagtacactgctgattaacctgggctca
gagaactgtgccacgctgttgcactttgtcctgctggagagtaagatcctgctgcactcc
ttgagacccgctgtactcaccggggtagcagaggctgtggtggcgatgatttttccattc
cagtggcagtgcccgtacatccccctctgcccgctctccctggcgggggtcctcaacgca
ccctgtcccttcattgtgggcgtggactcccgctactttgacctctatgaccctcctccg
gacgtggtctgtgtggacctggacaccaacacgatctacctgtctgatgagaagaaacac
agcaactggaagaacctcccaaagaagccctgcaagagtctgtttaactccctgaccaac
ctgcaacaccagctgggcatcgtgcgtcggacggcccaggagggcttggcggtggagatg
acccccatcgaggcggacttcacctggcacaagaagatgacctccctggagatggagatc
caagaggccctgctgcgcttcatggcccacatcctgaagggctaccgttcctatctcaaa
cccatcacccaggccccctccgagaaggccacctctgcagactcactatatgacctacag
ggtttcctaaagagcagggagcgagcccaccagaagttctattcgcagctgaccaagact
cagatctttatacgcttcatcgaggagtgcacattcgtcagcgacaaggatacaggcctt
gccttcttcgacgactgcattgagaagctatttccctctgataaagggaacgacaaaggc
actaaggtggagggtgagtcctcggaggacattaagctcatggaactagacgaatcacag
aggagtgagcatacagtcttcgtcatgcccccagaacctcccaccaccgaggacgaatct
gatccccctacccgctacagttataagagtttccctcggttgcgtatggacctgtttgac
cgtcccaaagaggtgataccagcgctgaggagcagtacaccaggggccagcctgtccagc
agccctgcactgctggccaagaggaccaagcaggagatcaagctggcctacaagatggcc
aagcgcttctactccgaccctccgctgtgggccaagtgtctgttcagccactgctacagt
ctgtggttcatctgtctgcccgtgggggtgaggctggtccagtcaaagagctgggccatg
cagcaggcctacaacgtcctgctcaagatgaggacgtctgaggtggaggtcctggatgag
gtgtgttaccgtgtagtgatgcagctgtgtggtttgtacggtcagccggtcatggccgtc
cgtgttctggtggagatgaagaaggcaggggtgcaccctaacgcaatcacctatggctac
tacaacaaggctgttctggaaggcccctggccaagttggaaccgcagcggtctcttcatg
tgggccaaggttcgcaacgtggtgcgcactgtggcccaatttaaacaggcactccaccgg
atgcccgccacaaaaggacccaccatcatcacgacagtggtgtcggtgagcagcgacctg
ctgagccacgggagtgcagaccactccagtgaggtgaacggagaggatcacacgctgttt
gcacgcagcctcatcataggagacgccacagacaaccactgcagcacaggaggtcagtct
gaccagggctacggctctaaagatgagctgcatcaggtgcaagtggatttggctccatca
gcagcccctcttgtcgatgtggatcaccgcagcaagcccaaagcacagcacaatggtggg
gacatagctggctcggtggacagttctgtggtcgtagcggagcccaccagccctgttgaa
gccatcccacatgtccccagcatcgtcaagctgtccacaggagggagcttcgatactgcc
atgaagagaggagaaactgccccagggaagctgttctctctgcgcagccagagcgagaat
gtctctctgccggaggagggtgagtctacagccccgggtggctctggggaggcggggcct
gcagttcaggggcagggccagcgccagaaggccttctcggagcgcagctgcagcttcagc
gttgagagtcgtgccggcatgctgatggagaaaaatggtgtggaccacatcgcgagacgc
atgggtgccgatgcccgaatcctcgccgatgccctttctgggtgtggcaccacccaacca
cctacaaatccaccatccaaggccctttttaaggagttggagtcagaggaggggcgttgt
ccgatgctggggaaactgtcagaggaggagggtcctgtaatggacccaaccccattggag
gaggggctagggaaagaggaggagagaatggacggggaggatgagatgggactgaagttg
gaagaggaaggagattcaggggggaggggtgatagctctctgccaaccctggagatgaag
gaggtggatgtgggggctgatcccctctccctgctggtctcagagcacgaagagttggcc
tccgtaaccagccaggagctgccgcactccctgcccgccgtggtgtcccgaaacctggca
gacgagattgagatgtacatgagcctgcgaagcccactgggccccaagtcctccagtatg
gagttccagcagggggggcagggaggggactcttccccggacactgccccagttaagcaa
gctctagaacggaggtccagcctccctgtgccccctgtcaaacacccagggggttcaagc
ggggactcgacgcccaaacgcagccctgctgctgtcacgcgctccaagaccttcgccgtt
atggccaccaggagccgcggtgttgtggccagcccgaggtcgtcactgactgcgctggtg
aggtcatcgcaaaatggctcgctgggctcggtcatcaactccatctcaggcatgaagatg
gacaccctgctctctggtcccaagatggacgtgttgaagtcaggcatgaagcaggcaggg
aacctggccagcaaagtgtggggggctgtggcctcagcctattcctactccgatgacgag
gatgagctggccccgggctacagggatagggatagtttccctgccgggctggatgagtcc
atgctgtcagggggtggaggaggggacagtcccacccacagagggccaacccaaggcctg
gtgtccaacggactgacacagagcagcaccagcctggccagcagcagtagcagcagtgac
acagggagaggacctcactccacactgactccaggacggccagggagaggtccagactct
gatcaaggctcccaccacaccagctcctcaagtatctaccaaaactgtgccctagaggtg
ctgatgtccagctgctccctgtgtcggtcctgtgagtgtctggtgtacgacgaggagatc
atggcgggctggacggcagacgactccaacctcaacactacctgtcctttctgccgcgcc
gcctttctgcctctgctccacgtcgagttccacgacctgcgcaccaacacagcgttctac
ctgaagcccagtgcatcaggagacagtatccacagcgccagccaccagcccacaactaca
gactccaccgtgctcggggttgggggtgcagcagacaccccgcccccggacctcatcagc
ttcccagaatcctcctctgaggacccaggggaggccccggccagccaaaccgccactcac
aagagtttggtgccggagccggctcagtcggaccctctgggcttgctggaacaccaggca
gggaagcgggggacttctctgacgcgcagtaacagtgtgggcgggccactacagagcctg
gtctcttaccagagacaacccggacacggcgtgtccaccaccagcctgccctgcagcctg
acagaggtggatggcctgggacaaaagcggcccgaccccatgccagtgtctgtgccctac
ctcagccccctggtcctccgcaaagaactggagaccctactagagaacgagggagaccag
gtgatctacacccataaattcctgagtcaacaccccatcatcttctggaacctggtgttt
tatttctgtcgtctggacctgcccagctacctgcctggcctcatcctcacctcagaacac
tgcaacaatggagtacagctcccccagacctccctgtcccaggacagtaaacaggtgtat
gtgcagctgctgtgggacaacatcaacctgcaccaggagcctggcgatcccctctaccag
agctggaggaccctgctggagaagaaggccaccctggcccccacggaccatcaggagaca
cggaccttcctcaacagcatcgtccgcagcatccagacgaacgatgtatacggccccatc
aatctgctcctccgagaggtcaagcggcacccagaggtcaaacgccaaaggggtatctat
agggagatcctcttcctggcgcttgtggcattgggacgggagaacattgacgtcgaggcc
tttgaccgtgaataccgccaggcctttgatggtctgagcacagagcagctcaaggctctg
cacaagattgaccggccacccaacagcaatgtccagtggtgcctcaagtgctttggagct
ccagtcatctga
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