Oncorhynchus tshawytscha (Chinook salmon): 112214893
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Entry
112214893 CDS
T05605
Name
(RefSeq) protein polybromo-1 isoform X1
KO
K11757
protein polybromo-1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
112214893
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
otw03021
]
112214893
03036 Chromosome and associated proteins [BR:
otw03036
]
112214893
Transcription machinery [BR:
otw03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
112214893
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Chromatin remodeling factors
PBAF complex
112214893
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bromodomain
BAH
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
112214893
NCBI-ProteinID:
XP_024229697
UniProt:
A0A8C8FS12
LinkDB
All DBs
Position
LG02:complement(41938518..41976866)
Genome browser
AA seq
1640 aa
AA seq
DB search
MSSKRRRATSPSSSVSGGDFDDASSSTPGSGRKRRRPSNVPTVDPITVCHEVYNTVRDHK
DDQGRLLCELFIRVPKRRKQPDYYEVVSQPIDMTKIQQKLKSEDYQDVEQLTADFQLMFN
NAKTYYKADGVEYQEACRLWELYVHTRNEFVQPGDGDEDDDDGEDILDNRALFTEDETPP
SCLKEVLEQLLDAVVSYTDPSGRVISELFQKLPSKVHYPDYYAVIKEPLDLRAITQRIQI
GYYKSVTGMAKDVDLLVKNAKTYNEPGSQVFKDANIIKKVFIQRKTEIDHAEPTKTSVRI
KNRRSAQGDRFSAITLALQYGSENDEDDLLSGSVHYDEGESEAECLSSSMDMGNPVFQLY
EAVRGGRNSQGPLLSEPFLQLPSRKEYPDYYQQIKHPIALQQIREKMKNGEYESVEQMDS
DLTLMFENAKCYNVPTSGISKRALRLQQILLLKKRELLRRGDEEEQESILSSDTGTGSAT
KRKSHKKNMKNRMKALYAAVTEAREPGTNRRLCDLFMVKPSKKDYADYYKVILEPMDLKT
IEHNVRSKRYATEEALMDDMRLMFRNARHYNEEGSQVYNDAGILEKIVKDKRKDLGASPE
EDTDNMGSPKLKLRKSGVSPKKSNKCLTPLQQRLNELYDAVRNYTDARGRRISTIFLRLP
SRAELPDYYATIKRPIDMERLRSHMAGGRYQDVDALVEDFAVMFNNACTYNEPESLIYRD
ALLLHRVLLDTRRLQEGGEEGGGSPPAVGPVVMELIRNLFVSVLAHQDEEGRCYSDSLAE
IPAQDPTSPENPPLNFDVIRANIDRGRYRRLDVFQEHMFNVLEKARRLHRTDSEIFEDAV
ELQQFFIKIRDELCKNGEILLSPALSYTSKHLHNDVEQEKREKLPKEIEEDKLKREEENK
EEGEKAEDPAGGGAGPERTYRQDCSFENRTYHVGDCVYVQPAEANLKPHIVCIERLWEDE
TGEKWLYGCWFYRPSETFHLATRKFLKQEVFKSDYFSKVPVSKILAKCMVMFVKDYFKLQ
PEGVRPEDVYVCESRYSARNKAFKKIKMWAGPAGVRFVPRDVPLPVIRVASMYAKRDQEK
LLAVADNGNHSIVDKELEDVPVEMSGGEPGCQYYDQLHYNNMWLKVGDCVYVQSHGLVKP
RVGRIEKLWVRDGAAFFFGPIFIHPEETGHEPTRMFYKREVFLSNVEEACPMTCVIGKCV
VSSFKDYLSCRPTEVSEEDVFLCESRYIESEKQMKKFKGLKRFSLHAKVVDDEVYYFRKL
IVPQKEPSPLLNKKIEELELKLADMDEGDEDLDDLEDEDEAPETPSMPTIQTPLASDLDI
MPYTPPPQSTPKAKGVSKKEGAKRKVNMSGYILFSSEMRSVIKTRHPDFSFGELSRLVGT
EWRNLEAPKKVEYEERAARVVERQEKERAAQQQASPRAGTPVGSMMGVVPSPSHMGMMPG
PGMMGAYGPPYGMPMQGPHEGLLGMGPMPPHHMGPMPPQHLQPGMPGYHPGMPYPGMMGP
GMNGMQGSPGGHYYMQQPGMFSPGQQAPPPYPGQLGQPSHLQPMTPMFVAPPPKTQRVLH
SEAYLKYIEGLNAETDTVSKWDQSLKARRRDAHLSKDQESRLPSHWLKSKGAHKTMADAL
WRLRDLMLRDSLNIRQAYNM
NT seq
4923 nt
NT seq
+upstream
nt +downstream
nt
atgagttcgaaaaggagaagggccacctctccatccagtagtgtgagcggaggggacttt
gacgatgcctcctcctccactcctggaagcgggcgaaagaggagaagaccctctaatgtc
cctacggtagatcctattactgtgtgccatgaggtgtacaacactgtcagggaccacaag
gacgaccagggaagactgctttgtgagctgtttatcagggtaccaaagagaaggaaacag
ccagactactatgaggtggtgtcccagcccatagacatgaccaagatccagcagaagctc
aagtcagaggactaccaagatgtggagcagctcactgctgatttccagctcatgttcaac
aacgccaagacctactataaggcagatggtgtggagtaccaagaggcctgcaggctgtgg
gaactctatgtccacaccaggaatgagtttgttcagccaggggatggtgatgaagatgac
gacgatggtgaagacatcctagataatcgtgctctcttcactgaagatgagaccccaccg
agctgcctgaaggaggttttggagcagctgctagatgctgtagtgtcatacacggacccc
tcaggaagggtcatcagtgagctcttccagaagctgccttccaaagtgcactacccagac
tactatgccgttatcaaggagccccttgatctgagagccatcactcagagaatacagatc
ggatactacaaaagtgtcaccggcatggctaaggatgttgaccttctggtgaaaaatgca
aaaacatacaatgaaccaggatctcaggtttttaaggatgctaacatcatcaagaaggtc
ttcatccagagaaagactgaaatagaccatgctgagcccactaagaccagtgtccgcatc
aagaaccggaggtcagcccagggagaccgtttctctgccatcaccctggctttgcagtac
ggctcagagaatgatgaggacgacctgctctctggctctgtgcattatgatgagggtgag
tctgaggcggagtgcctgagctccagtatggacatgggtaacccagtgttccagctgtac
gaggctgtgagggggggcaggaacagccagggaccgctcctttctgaacccttcctccag
ctgccctccaggaaagaataccctgactactaccagcagatcaaacaccccatcgccctg
cagcagatcagggagaagatgaagaatggggagtacgagagtgtggagcagatggactct
gaccttactctgatgtttgagaatgccaagtgttacaacgtgcccacctcaggcatctcc
aaacgggccctccggctgcagcagatcctgctgcttaagaagagggagcttttgaggaga
ggtgacgaagaggaacaggaaagcattctgtcctctgacacaggaactggcagtgccacc
aagaggaaaagccataagaagaacatgaagaaccgtatgaaggcactgtatgctgcagtg
actgaagccagagagccagggaccaaccggaggctctgtgatctgttcatggtcaagccc
tccaagaaggattatgcagactactacaaggtgatcctggagcccatggaccttaagacc
atcgagcacaacgtccgctcaaagcgctacgccaccgaagaagccctgatggacgacatg
aggctgatgttccgcaatgcacgtcactacaacgaggagggatctcaggtttataatgac
gctggcatcctggagaagatagtgaaggacaagaggaaggatctaggagcttctcccgag
gaggacactgacaacatgggatctcctaagctcaaactaaggaagagtggtgtgtctcct
aagaagtccaataagtgcctgacccccctgcagcagcgcctcaacgagctgtatgacgct
gtgaggaactacacagacgccagggggcgacgtatctccaccatcttcctgcgcctgccc
tcccgtgccgagctgcctgactactacgccaccatcaagaggcccattgacatggagcgc
ctgcgcagccacatggcgggaggccgataccaggacgtggatgctctggtggaagacttt
gcagtgatgttcaacaacgcctgtacctacaacgagccagagtccctgatctaccgtgac
gctctgctcctccaccgcgtgctcctggatacccggcggctgcaggagggaggggaggag
ggcggcggctctccccctgctgtagggccagtggtcatggaactgatccggaacctgttt
gtgtctgtgctggcgcaccaggacgaggaggggaggtgttacagcgactcactggctgag
atccctgcccaggacccgaccagcccggagaaccctccgctcaacttcgatgtgatccgg
gccaacatagaccgaggacgctaccgcaggctggacgtgttccaggagcacatgttcaat
gtgctggagaaggccaggcgcctgcacaggacggactctgagatctttgaggatgcggtg
gagctgcagcagttctttataaagatccgggatgagctgtgtaagaacggagagatcctc
ctctcccctgcgctcagctacacctccaaacacctgcacaatgacgtggagcaggaaaag
agagagaaactacctaaggagatagaggaggataaactgaagagggaggaggagaacaaa
gaggagggagagaaggctgaggacccagctgggggaggtgcggggccagagaggacatac
cgtcaggactgcagctttgagaacagaacctaccacgtgggtgactgtgtctacgtgcag
ccagccgaggccaacctcaagcctcacatcgtctgcatcgagcgcctgtgggaggatgaa
acaggtgagaagtggctgtatggctgttggttctacaggcctagtgagacctttcatcta
gccacacgcaagttcctcaagcaagaggtcttcaagagtgactacttcagcaaagtacca
gtcagcaagatactggcaaaatgcatggtcatgtttgtcaaggattacttcaagcttcag
cctgagggagtaagaccagaggatgtgtacgtctgtgagtcccgttactctgccaggaac
aaggccttcaagaaaatcaagatgtgggccgggccagccggcgtgaggtttgtccctcgg
gatgtgccgttgcccgttatccgcgtggcctccatgtatgccaaacgtgatcaggagaaa
ctgttggccgtggccgataacggcaaccacagcatcgtcgacaaggagcttgaggatgtc
ccagtagagatgagtggaggggagccaggctgtcagtactacgaccagctccactacaac
aacatgtggctgaaggtgggagactgtgtctacgtccagtcacatgggctcgttaaaccc
cgtgtcggcaggatagagaagctgtgggtgcgcgacggcgcagcatttttcttcggaccc
atcttcatacacccagaggagacgggacacgagcccaccaggatgttctacaagagagag
gtgttcctcagcaacgtggaggaggcctgccccatgacctgcgtcataggtaaatgtgtg
gtgtcgtcctttaaggactacctgtcgtgtcggcccactgaggtgtctgaggaggacgtg
tttctgtgtgagagccgttacattgagagtgagaagcagatgaagaagtttaagggcctg
aagcgcttctccctccacgctaaggtggtggacgacgaggtctactacttcaggaagttg
atagtgccccagaaggagccgtctcctctgctgaataagaagattgaggagctggagctg
aaactggcagacatggatgagggggatgaggatctggatgacctggaggatgaggacgag
gctccagagaccccctccatgcccaccattcagacccctctggcaagcgatttggacatc
atgccttatacccctcctccccagtccactcccaaggcgaagggcgtttctaagaaggaa
ggagccaagaggaaggtcaacatgagtggttatatcctattcagcagtgagatgcgttcg
gtcatcaagacccgccaccctgatttctccttcggggagctcagccgtctggtgggcaca
gagtggaggaacctggaggctcccaagaaagtagagtatgaagagcgggcagccagggtg
gtggagcggcaggagaaggagagggcagcccagcagcaagcatccccgagagcaggtacc
ccagtagggtccatgatgggggtggtgccttcgcctagccacatgggaatgatgcctggt
ccaggcatgatgggagcttacggccccccctacggcatgcccatgcagggcccccatgag
ggcttgctgggtatgggcccaatgccacctcaccatatgggcccgatgcccccccaacac
ctccaaccaggtatgcctgggtaccaccctggcatgccctatccgggtatgatgggtcct
ggtatgaatggcatgcaaggaagtcccggaggccactactacatgcaacagcctgggatg
tttagcccggggcagcaggctcctccaccctacccaggccagctaggccagccctctcac
ctccagcccatgactcccatgtttgtggctccaccgcccaagacacagagggtgcttcac
tctgaggcctacctcaagtacatcgagggcttgaacgcagagaccgacacagtcagcaag
tgggaccaatctctcaaagcgcgtcggagagatgcccacctgtccaaagaccaggagagc
aggctcccttcccattggctgaagagcaagggagcccacaagacgatggcagatgcactg
tggcgcctgcgggacctgatgcttcgagactcactgaacatacggcaggcgtacaacatg
taa
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integrated database retrieval system
