Oncorhynchus tshawytscha (Chinook salmon): 112215028
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Entry
112215028 CDS
T05605
Name
(RefSeq) LOW QUALITY PROTEIN: transcription factor SOX-5
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112215028
Transcription factors [BR:
otw03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
112215028
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
MATalpha_HMGbox
Motif
Other DBs
NCBI-GeneID:
112215028
NCBI-ProteinID:
XP_042153969
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Position
LG15:complement(7286812..7402281)
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AA seq
762 aa
AA seq
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MLTDPELPQEFNRMSSKRPISPYGGTDGEVVMATSRQRLEEEERDDGQAVMHLPLTPYCS
KVSPARPAXPGQPPTLHSAMDQDGSKGWSLSPYPQHNSSTSPGSKQQVEEGGSGAAALGT
PERRKGSLADVVDTLKQRKMEELIKNEPEEAPSIERLLSKDWKDKLLAMGSGHFGEIKGT
SESLAEKERQLMGMISQLSSLREQLLAAHDEQKKLAASQIEKQRQQMELAKQQQDQIARQ
QQQLLQQQHKINLLQQQIQQVQGQLPPLMIPVFPPDQRTLAVAAAQQGFLLPPGFNYKPG
CSDPYPLQLVPTTMAAAAAAATPGLGQLQLQQLYAAQLAAMQVSPGAKHSSMPQTNLNTH
SPTNTHQEKSRSTPPPKPKDEGAQPLNLSSKPKTASESKSPTSPASPQVPTMKLGHHGTG
SMKHSTAPSSVGGPPSRVSSIDLLSSLSSGGYLNDHEAVTKAFAEARQMKEQLKREQQVL
DAKVAAVNNLSLNNGRSDKDKAALESLSHQLKQQSEDREKFSHAMMDFTMSGDSDGSPSV
SDSRMFREARGRGNSEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSM
TNLEKQPYYEEQARLSKQHLEKYPDYKYKPRPKRTCLVDGKKLRIGEYKAIMRNRRQEMR
QYFTVGQQAQLPLSSAGVVYPGALAMAGLPSPQMPSEHSSLSSSPEPVAPPLQTPYHPSL
KGEETRVKQEALRLDDSNGDAYDDFDYEDEEGDYGSDNDNHQ
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atgctcacagaccctgagctacctcaggagtttaacaggatgtcttccaagcgaccaatc
tctccatatggggggacagatggagaggtagtcatggcaaccagcagacagagactggaa
gaggaagagagagatgatggacaggctgtcatgcacctccccctgactccctactgcagc
aaggtgtcccccgctcgccccgccnnccctggacagccccccaccctgcacagtgccatg
gaccaggatggcagtaagggttggtctctgagcccctacccccagcacaactcctctacc
tctccaggcagtaagcagcaggtggaggaggggggttcaggggccgcagcgctggggacc
ccagagagacgtaagggcagcctggctgacgtggtggacacactgaaacagaggaagatg
gaggagctcatcaaaaacgaaccagaagaagcccccagcattgagaggctgttgtctaag
gactggaaggacaagctgttggccatgggatcaggacattttggagaaatcaaaggtacc
tcagaaagcctagcagagaaggagcgccagctgatgggcatgatcagccagctcagcagc
ctgagggagcagctcctggcggcccacgatgagcagaagaaactggccgcctcgcagatc
gagaagcagcggcaacagatggagctggccaagcaacaacaggaccagattgctcggcaa
cagcagcagcttctgcagcagcaacacaaaatcaacctcctgcagcaacagatccagcag
gtccagggacagctgcctccgttgatgatccctgtgttccctccagaccagaggactctg
gctgtagctgctgcccagcaaggcttcctgctgccccccggattcaactacaaaccaggc
tgcagtgacccttaccctctccagctggtccctactaccatggcagcagctgctgccgcg
gccaccccaggcctcggtcaactacagctccagcagctgtatgcagctcagctggcagcg
atgcaggtgtctccaggggccaaacacagcagtatgccccagaccaacctgaacacccac
tctcccaccaacactcaccaagagaagagccgcagcaccccgccgcccaaacccaaggac
gagggtgctcagcccctgaacctgtcgtccaagcctaagacagcaagcgagagcaagtca
cccacctcccccgcttccccacaggtccccaccatgaagctgggtcaccatggcaccggg
tccatgaaacacagcacagccccctccagcgtcggaggaccaccgtccagagtcagctcc
atagacctgctgtcatccctgtcctccgggggctatctgaacgaccacgaggctgtgacc
aaggccttcgctgaggccagacagatgaaggagcagctgaagagagaacagcaggtgttg
gacgccaaggttgccgccgtcaacaacctcagcctgaacaacgggcgctccgacaaggac
aaggcagctctggagagtctgagccaccagctgaagcagcagtcagaggacagagagaag
ttcagccacgccatgatggacttcaccatgagtggagactcagatggcagccccagtgtg
tctgattccaggatgttccgtgaggcccggggccgaggcaacagcgaaccgcacattaaa
cgacccatgaatgctttcatggtctgggcaaaggatgagaggaggaagattctccaggct
ttccccgacatgcacaactccaacatcagcaaaatcctcggttctcgttggaaatccatg
actaacctggagaagcaaccgtactatgaggagcaggcccggctgagcaagcagcacctg
gagaagtaccctgactacaagtacaaaccccggcccaaacggacctgtctggtggacggg
aagaagctgaggattggagagtacaaggccattatgaggaaccgccggcaggagatgaga
cagtacttcactgtgggacaacaggcccagctgcccttgtcctcggcgggcgtggtgtac
ccaggtgccctcgccatggcaggcttgccctccccccagatgccctcggagcactcctca
ctgtccagtagccccgagcccgtcgccccacccctccagaccccctaccatcccagcctc
aagggagaagagacccgagtcaaacaggaggcgctgcgattggacgacagcaacggtgat
gcgtacgacgactttgattatgaggacgaggagggagattatggaagcgataacgacaac
caccaataa
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