Oncorhynchus tshawytscha (Chinook salmon): 112215049
Help
Entry
112215049 CDS
T05605
Name
(RefSeq) laminin subunit beta-1
KO
K05636
laminin, beta 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04510
Focal adhesion
otw04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
112215049
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
112215049
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
LAMININ_IV_B
EGF_LMN_ATRN
LAMB1
OVT1
Med14
Motif
Other DBs
NCBI-GeneID:
112215049
NCBI-ProteinID:
XP_042173451
LinkDB
All DBs
Position
Unknown
AA seq
1177 aa
AA seq
DB search
MDYDMLIRYEPQLPDQWEQVEIRVIRPYSMRVGQPASPCENTLQGGDQQLVSLLPGSRHV
LLPRPVCLEKGRNYTVRLSLPLYSSLSDVQSPYTLIDSLVLIPRVRKLLLFEGSQGEGAW
DTFQRYRCLESSQSVIKSPMTDICNNYIFSVSALLHQGAMACQCDSQGSLSAVCDPSGGQ
CQCRPNVAGRNCDRCAPATFLFSPLGCRRCECSPPGSVNAFCHEATGQCECVPGASGRQC
AHCLPGYWGFPQCQPCQCNGNSDYCHPQTGECQGCRAFTTGHMCERCLDGYHGDPVLGLG
GHCRPCMCPDGPGSGRQYADSCYQTADNYQLVCACSPGYRGARCDECAPGHYGNPQVPSG
RCLPCQCNDNIDQLDPGSCDARTGICLKCLHHTEGYGCQHCKLGYYGNAASQSCRRCMCY
SVGTMSEACLSPGECHCDLQTGQCPCRPNVIGQNCDRCALDTFNIGSGKGCQTCDCDPTH
SFGTSCNELSGQCSCRSGFGGRKCNECRDKFWGDPEVKCQACDCDLRGIASEQCHRSSGQ
CVCVEGVSGPRCNQCARGYHGTFPACERCHQCFAEWDRVVGELSNQTQRLKDHVTELQTS
GVTAPYKDTVSSLEISANAISAIVENNPAIQKMEDVQQMMQQATELVADLNERLNVSEES
LSRLVVNANDTEASLDTLRKQAQELERKVTDIRDHIKTVKNSNIEGAMDTITKAHLESKR
AEIRANQTTSYPDNTLEQSATLRREAEARLSQNQAEFDLRQQKHTERLERLATELNTLDL
SELSKQTCGAARGEEGCAASPCGGVGCVSEDGTLRCGGEGCDGLVTQTQSTLKTAKDFDQ
EILSTLQEVDKLSRMVWEVKVRAGEAKLNAQEVLLKSNQSRDRVEQSNEQLRSLIKEIRG
LLTNDRAKVEVIEAVSNEVLALEMPTSPEQLEALTMEIRDRVGTLTSVEDILSQSANDIH
TAERLLEQARTASQEVSEMKETAALVKEALETTERAQNAAIDAVKQAHNNTRGTLDLITS
VESETAESELCLSNATLRLLQLERDVTLLRESSLGTSHHTQHTERLSETARQDAEQALQE
FDLEVKGKYSVVEGLVVTKAEGVSDARKRAELLQQEAKELLTQSSVKLQRFRELERSYAA
NQRTLEAKTVQLAGLEKTARQLLNDISQKVMVYSTCS
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atggactacgacatgctgattcgctacgaaccacagttgccggatcagtgggagcaggtg
gagatcagagtgatacgtccgtactcaatgagagtggggcagccagccagtccatgtgaa
aacacgcttcaaggaggagatcagcagttggtgtctcttcttccaggatccagacatgtg
ctgctcccgaggcctgtgtgtctggagaaggggcggaactacactgtgcgtcttagtctg
cctctttactcctctctcagtgacgtccaaagcccctacacgctcatcgactccttggtg
ttgattccgcgggtgcgtaagctgctgttgtttgagggttctcagggtgagggggcgtgg
gatacgttccagaggtaccgctgtctggagagcagccaaagcgtcatcaagagccccatg
acggacatctgcaacaactacatcttcagtgtgtctgccctgctacatcagggggctatg
gcgtgccagtgtgactcccagggctctcttagtgcagtgtgcgaccccagcggcgggcag
tgccagtgtcggcccaatgtggcaggcaggaactgtgaccgctgtgcccccgccaccttc
ctcttcagccccttaggatgcagacgctgtgagtgtagtcctccgggctctgtgaacgct
ttctgccacgaggccacaggtcagtgcgagtgtgttccaggggcgtcagggcgtcagtgt
gcccactgcctgccaggctactggggcttccctcaatgccagccctgtcagtgcaacggc
aacagcgactactgccaccctcagaccggggagtgccagggctgccgcgccttcaccacc
gggcacatgtgtgaaaggtgtctggatggttaccatggcgacccagtgttgggtttgggg
ggtcactgccgcccctgcatgtgtcccgacgggccggggagcgggcgccagtacgcagac
agctgctaccagaccgccgacaactaccagctggtctgtgcctgcagccctggatacaga
ggagccaggtgtgacgagtgtgccccaggtcactatggtaacccccaggtgcccagcggg
cgctgtctgccctgccagtgtaacgacaacatcgaccagctggacccggggtcctgcgac
gctcgcacaggcatctgcctcaaatgcctgcaccataccgagggctatggctgccagcac
tgcaagctgggttactacggcaacgccgccagccagagctgcaggaggtgtatgtgttat
tcagtgggcacaatgtcggaggcgtgtctgtctccgggggagtgtcactgtgacctgcag
actggccagtgtccctgccggcctaacgtgattggccagaactgcgaccgctgtgccctt
gatacgttcaacattggaagcggaaagggctgccagacctgtgactgtgacccaacccac
tcctttgggacgtcgtgcaatgagctgtcagggcagtgctcgtgcaggtcaggtttcggg
ggaagaaaatgcaacgagtgccgagataagttctggggagaccctgaggtcaaatgtcaa
gcgtgtgactgtgacctgcgtggcatcgccagcgagcagtgccaccgttcgtccggccag
tgtgtgtgtgtggagggtgtgtctgggcccaggtgtaaccagtgtgccagagggtaccat
gggacgttccccgcctgcgaacgatgccaccagtgctttgccgagtgggaccgtgtggta
ggggaactgtccaatcagactcagcgtttgaaggatcatgtgacagagctccagaccagt
ggggtgacggcgccgtacaaagacaccgttagcagtctggagattagtgctaatgctatc
agtgcgatagtagagaacaaccctgctatacagaagatggaagatgtacaacagatgatg
cagcaggccactgagctggtggcagacctgaacgagaggctgaacgtctcagaggaatcc
ctgtcccgtctcgttgtcaatgccaacgacaccgaggccagtctggacacactgagaaag
caggcccaagagctagagagaaaagtcacagacattcgagaccacataaagactgtgaag
aactctaacatagagggagcgatggacaccatcaccaaggcccacttggagtctaagagg
gcggagatccgtgccaatcagaccaccagttaccccgacaacactttggaacagtcggct
acactacggcgtgaagcggaggccagactgagccagaaccaggcggagtttgacctgaga
caacagaaacacacagagagactggaaaggctcgccacagagctcaacactcttgaccta
tcagagctcagcaagcagacatgtggagcagctaggggggaggaggggtgtgctgcgtcc
ccctgtggaggggtggggtgtgtgtcggaggacggcacccttcgctgtggtggggagggg
tgtgacggtttggtcacacagacacaaagcactctgaaaacagccaaggacttcgaccag
gaaatcctctccaccctgcaggaagtggacaagctctctaggatggtgtgggaggtgaag
gtgcgtgcgggcgaggccaagttgaatgctcaagaggtgctgctgaagtccaaccagagc
agagatagagtggaacagagcaacgagcagctccgcagcctcatcaaggagatacgaggc
ctactcactaacgaccgtgccaaagtggaggttattgaagcggtttcaaatgaggtgttg
gccctggagatgcccacatcgcccgagcagctggaggccctgaccatggagatcagagac
agggtgggaaccctcaccagcgtggaggacatcctcagtcagagtgccaacgacatacac
actgcagagaggctgctggagcaggcccgcacggccagtcaggaggtgtctgagatgaag
gagacagctgccctggtgaaggaagctctggaaacgactgagcgtgctcagaatgctgcc
atcgatgccgtcaaacaggcccacaacaacaccaggggaacacttgacctcatcacatct
gtggagtcggagacggcggagtcggagctgtgtctgagtaacgccacactgcgtctgctg
cagctggagagagacgtgactctgctgagagagagcagcctgggcaccagccaccacaca
cagcacactgagagactgtctgagaccgctaggcaggacgcagagcaggccctgcaggag
tttgacttggaggtgaagggtaaatacagtgttgtggagggcttggtagtgacgaaggca
gagggcgtgtctgacgccaggaagagggcggagctactgcagcaggaggccaaggagttg
ctcacccagtccagtgtaaaactacagagattcagagagttggagaggtcgtatgcggcc
aaccagcgtactctggaggccaagacagttcagctggccgggctggagaaaacagcacgc
cagctgctcaatgacatcagccagaaagtaatggtctacagcacctgttcttag
DBGET
integrated database retrieval system
