Oncorhynchus tshawytscha (Chinook salmon): 112215150
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Entry
112215150 CDS
T05605
Name
(RefSeq) LOW QUALITY PROTEIN: rab effector MyRIP-like
KO
K22237
Rab effector MyRIP
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112215150
Membrane trafficking [BR:
otw04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
112215150
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rab_eff_C
FYVE_2
FXR_C1
DUF155
Motif
Other DBs
NCBI-GeneID:
112215150
NCBI-ProteinID:
XP_042155086
LinkDB
All DBs
Position
LG16:39677858..39825799
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AA seq
1044 aa
AA seq
DB search
MGRKLDLSGLTDNEAEHVLKVVQRDMKLRKKEEDRLSEMKQELAEEGSRCSILSKQHRFN
EHCCIRCCSPFTFLVNPKRPCLDCQYNVCKTCRTYSKREKAWLCTVCQKTRILRTQSLEW
YYNNVKSRFKRFGSAKVLKTLYRNHIVERGGILDLPESSVHDGSNDNDGSVCGSDSTFYR
QSEGHSMAETLTVALRVAEEAIEEAIANAEEFSDSLEKQNEARYLRDHKEELIEELATTI
VQKIIQRRKHSEMQSEYDFVWPQRPSQGQPQGSELSSPSQHPHSTLAQANQAHLKSSYSL
WRSRSAFSLTSDDSPEKVTEAXNGGGGGVQDYASLKKETARASSLPSWKSVDRLDNSSAS
SVLQSPDGNWIALQSSQHSRPSLLAKRKSLVFSVLEKESGVVSAYDEMGSDSDQENDKGG
WGAAFRQFRQKLSDETYYTDSQHDPEWTYTPVHLPVTSPSSGQYTNTETVNSDSESSSVP
STRPRKPFHNVMGRKGPNSDSHLHPQQAQYHHHHQHQNFPSYPLHPEALDVNFNPKVTGD
SSEAEDSMQSDQVRRSRRRRKSKREAAGNQAHTQTHTQPLYAQSVQENSILLNGLLKRGM
SEEMAAPDVVPEAMTPEPEDQDIVAPNSAAPSPRNPMTPDPLSTSSTGPGSGDTLEQELR
SKLSQLVGRANSKEVVSSSEDEPIKSPGGRDRESDRPKEKLRQNEREGDRQRQSERPRDR
PRSKSHDRAKRETIESVKGPELKKRERLTERPILREEERVKERRLGRGGKSLEEKVDDRE
EKRVEKNRLSKRPQGQEVDRKTEKKGEQVEDQNEKTGSTPTSLAITPSVQEGVLCDGQEG
QNWLELQQRLQLLSSLLQQKYSAASLCSITTEVLKVLNATEELIGEAGGISVTPSECMSA
SESFSSSLETRELDQKLTKMEENVYLAAGAVYGLEGALGDLEEVARDISSSTSDRELAFL
EDQVATAATQVQQSELQISDIEVRILSLKTAGLNVTACNRFSKFPKPKPKPQTLDTSRQQ
RRKLPAPPAKDKESEQQVRALQPY
NT seq
3135 nt
NT seq
+upstream
nt +downstream
nt
atggggcgcaagctggacctgtcgggcctgacagacaacgaggcggagcacgtgctgaag
gtggtgcagagggacatgaagctgaggaagaaggaggaggacaggctcagtgagatgaag
caggagctggcggaggaaggcagtagatgctccatcctctccaagcagcaccgtttcaac
gagcactgctgtatccgctgctgctctcccttcaccttcctggtcaaccccaagcgcccg
tgtctggactgccagtacaacgtctgcaagacctgccgcacctacagcaagcgagagaaa
gcctggctctgtaccgtctgccagaagaccaggatattgcggacccagtctctagaatgg
tactataacaacgtgaagagccgcttcaagaggttcggcagtgccaaggttctgaagacg
ctctacagaaatcacatagtggagagaggaggcatcttggatctaccagaaagcagtgtt
cacgacggaagcaatgacaatgatggcagcgtctgtggcagtgactcaaccttctacagg
cagagtgaaggacacagcatggcagagaccctcacggttgccctgcgcgttgctgaggag
gccatagaggaagccatcgccaacgcagaggaattcagtgacagcttggagaagcagaat
gaggctcgctacctacgggaccacaaagaagagcttatagaggaactggccacaaccatc
gtacaaaaaatcatccagaggaggaagcattccgagatgcagtcagagtatgactttgtg
tggccccagagaccgagccagggccaacctcagggcagtgagctgtcctcccccagccag
caccctcacagcaccctggcccaggccaaccaggcccacctcaagagctcatactccctc
tggaggtcacggtcggcattctccctgaccagtgatgactccccagagaaggtgactgag
gcanctaatgggggcgggggcggggtacaggactacgcctctctgaagaaggagacggcc
agggcctcctcactgcccagctggaagagtgtggaccgcctggacaactccagtgcgtct
tcggtgctgcagagccctgatggaaactggattgcgctgcagagctctcagcactcccgt
cccagcctactggccaagagaaagtcgctggtgttcagcgtcctggagaaagagtctggc
gtggtctcggcctacgacgagatgggctctgattccgatcaggagaacgacaaggggggc
tggggggccgcgttccgccagttccggcagaaactctcagacgagacgtactacacggac
tcccaacacgacccggagtggacgtacaccccggtccacctcccggtcacctcgccctcc
tcgggccagtacaccaacacggagaccgtcaactctgactcagagtcctcgtcggtaccc
tccacccgcccccgcaaacccttccataacgtgatgggaagaaaaggccctaactcagac
tcgcatcttcatccccagcaggctcagtaccaccatcatcatcaacaccagaacttcccc
tcgtacccgctccacccggaggcgctggatgtgaactttaaccccaaggtgactggggat
agtagcgaggcagaggacagcatgcagagcgaccaggtcaggaggtcgcggagacgcagg
aagagcaagagggaagcggcggggaaccaggcccacacacagacacacacacagcccctc
tacgcacaatctgtacaggagaacagtatcctgctgaacggcctgttgaagaggggcatg
agtgaggagatggccgcccctgatgtggtgcccgaggccatgacccccgagcccgaggac
caggacattgtggcccctaactctgcggcccctagcccccgtaaccccatgacccctgac
cccctgtccaccagcagcactgggcccggctccggagacacactggagcaggagctccgc
tccaaactgagccagctggttggacgagccaacagcaaagaagtagtgagctcatctgag
gacgagccaatcaaaagtcctggagggagagaccgagaaagtgacagaccgaaagagaag
ctgaggcagaatgagagagaaggtgatcggcagagacagagtgagagaccgagagacaga
ccgaggagtaaaagtcacgatagggcgaagagagagacaatcgagtcagtgaaagggccg
gaactgaaaaagagagagagactaacggaaaggccgatattaagagaggaggagagagtg
aaggagaggaggttggggagaggaggaaagagtttggaagagaaagtagatgacagagaa
gagaagagagtggagaagaacaggctcagtaagagaccacagggacaagaggtggacaga
aagactgagaaaaagggggaacaagtggaagaccaaaatgaaaagaccggatccacgccc
acctcgcttgctattaccccatctgtccaggagggggtgctgtgtgacggacaggaggga
cagaattggctggaactacagcagaggctacagttgctctcctctctcttacagcagaag
tactcggccgcatctctgtgcagtatcaccacagaagtcctgaaggtgctcaacgctact
gaggagttgattggtgaggcggggggcattagcgtcaccccctcagagtgcatgagcgcg
tctgaatccttctccagcagcttagagaccagggagctggaccagaaactcacaaagatg
gaggaaaacgtgtacctggctgcgggggcggtgtacggcctggagggggcactgggggac
ctggaggaggtggcccgggacatcagcagtagcacctcagacagagagctggccttcctg
gaggaccaggtggccactgccgccacccaggtgcagcagtctgagctccagatatcagac
atcgaggtgaggatattatctttaaaaacagctggactgaacgtcaccgcctgcaatcgt
ttttccaagttccccaagccaaaacctaagcctcaaaccctcgacacgtcacgtcaacag
aggagaaagctacctgcccctccagccaaagataaggagtccgagcagcaggtgagagca
cttcagccgtactga
DBGET
integrated database retrieval system
