Oncorhynchus tshawytscha (Chinook salmon): 112215154
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Entry
112215154 CDS
T05605
Name
(RefSeq) sex-determining region Y protein-like
KO
K09270
transcription factor SOX7/8/10/18 (SOX group E/F)
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112215154
Transcription factors [BR:
otw03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
112215154
SSDB
Ortholog
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Motif
Pfam:
HMG_box
HMG_box_2
HMG_WDHD1
Chlor_dismutase
Motif
Other DBs
NCBI-GeneID:
112215154
NCBI-ProteinID:
XP_024229869
UniProt:
A0A8C8G277
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Position
LG16:41221489..41223146
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AA seq
317 aa
AA seq
DB search
MYFDRIHPHSDLCITKAMFESDEFCGASSQSEQMSEAQSLGSVPSSHLSVNSDSSCSSPE
PKPLAEPRVRRPLNAFIIWTKEERRRLAKLNPELENKELSKMLGKTWKDMSLAEKRPYMQ
EAECLRVQHTIDHPKYKYRPRRKKQLKKGPKALPVEALVPLNYLIQNHCHQQQAYPNPAI
YPNSQAYFSHMPGTYPNRSNYPDPSATFPNKLLEYSNTGTYPAEPHPYYSTQHRLQQCEV
PSPAYAVSHWEQGDFMAQGLQLFSSTDLSLELYLEQIHLDMLYDLDRSEFEQYLSPPPCR
PEPMESSYHQQGSLREA
NT seq
954 nt
NT seq
+upstream
nt +downstream
nt
atgtactttgatcggatccacccacattccgatctttgcataacgaaagccatgtttgaa
agcgacgagttctgcggtgcgtcttcccagagtgagcagatgtccgaggcgcagtccctc
ggctctgtcccttccagtcatctctcggtcaactccgactccagctgctctagtcctgag
ccgaaaccattggcagagccacgggtcagaaggccgctgaacgcctttattatctggacc
aaggaggaacgcagacgccttgccaaactcaaccctgaactagagaacaaggaactcagc
aaaatgctcggtaaaacttggaaggacatgtctctggcggagaagcggccctacatgcag
gaagcagagtgcctgagagtacagcacaccatcgaccaccccaagtacaagtaccggccc
cgcaggaagaagcagctgaagaagggccccaaagccctacctgtggaggccctggtccct
ctcaactacctaatccagaaccattgccatcagcagcaagcctacccaaacccagccatc
tacccaaactcccaggcatacttctcccatatgcccgggacctacccaaacaggtccaat
tacccagacccatcagccacattccctaacaagcttctagaatactctaacacagggaca
tacccagcagagcctcacccatactactctacccagcatcggctgcagcagtgtgaggtc
cccagtccagcctatgctgtgtctcattgggagcagggggacttcatggcccagggcctc
cagctgttctcctccactgacctctctctggagctctatctggagcagattcacctagat
atgttgtatgatctggaccgcagtgagtttgaacagtacctgagcccgcccccatgcagg
cctgagccaatggagtccagttatcaccagcaaggcagcctacgggaggcctga
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