Oncorhynchus tshawytscha (Chinook salmon): 112215173
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Entry
112215173 CDS
T05605
Name
(RefSeq) transcription initiation factor TFIID subunit 4 isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
112215173
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
otw03021
]
112215173
03036 Chromosome and associated proteins [BR:
otw03036
]
112215173
Transcription machinery [BR:
otw03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
112215173
Coactivators
SAGA/TFTC/STAGA complex
112215173
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
112215173
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
Motif
Other DBs
NCBI-GeneID:
112215173
NCBI-ProteinID:
XP_042155176
LinkDB
All DBs
Position
LG16:47716086..47729248
Genome browser
AA seq
940 aa
AA seq
DB search
MAAGSDLLDDAFFNTEVDEKVVSDLVGSLESELTGSGRGNSAVRVQAAANHIGNSNVQDS
KMGLSQELAKPGTSVQAGVINSTRSTMDTAAGTTAAAGSGMTAGHSQSKTGAAGCVVTVV
PDHGEGIGKTGSAGGQTLNGSSVVINSQNLVSSASSTVPAVTVVNNGPGSVVEGNVILPS
TSIQTSLMDNAVTSTVVSSQPSVLNSVPTVTLVRPPMHIAGAVTSPSGSNTFLTSSVNVA
HPACSGAQINKSESPKTAIQKTAQVTGTAAAVAKSPSTIAISPGGIRAIAPQVLAPRLPQ
PQQNAPNIQNIQLPPGMVLVRSESGQLLMIHQQTLAQMQAQSQSPMTPRPATPTSTPPVQ
ITSVQAPGMPLMARQVTPTTIIKQGTPAQTTVLQRPPVLQQNTIVLGGAAATPGQAPVPP
GSAATAAVNQRAGTPGATGTPGTPTTTIETLENVKKCKNFLSTLIKLASSGKQSSETTAS
VKDLVKSLLEGKIEAEEFTSRLYRELNSSPQPYLVPFLKRSLPALRQMTPDSTAFIQQSQ
LPQASVQPASSSTALTTVALGGTAAAQRLPLNRTTSPGAKGTMHQSPVISPALTPHSKPG
LMVPQQQGALASTQVTLAQSPMVTFRGQSHSRIIMGHPQVVKQLQTVPVVKQALSPGAKV
TLGRQSMLSVAQKNKLKEASGGTFKDDDDINDVASMAGVNLSEESARILATNSELVGAVT
RSCKDEAFLHTTSLTRRVQEIGRRFGVIDLGPEVINYVSHATQQRLQNLLEKVTEVAQQK
NITFKEDDKYEQVSDVRAQLKFYEQLDQMEKQRKEEQEREILMKAAKSRSRQEDPEQLRL
KQKAKEMQQQELNQIRQKEANMTALAAIGPRKKRKMESPVNGAGAEGSGSGPSSSGGANS
GGSRPQRQRITRVNLRDLLFCLENERETSSSHLLYKGFLK
NT seq
2823 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgggctcggatttgctggatgatgcctttttcaacactgaggtggacgagaaa
gtagttagtgatctagttggatctttggagtctgagctcacgggatcgggtcgcggaaac
tctgcagtcagggtccaggctgccgcaaatcacattggcaactccaatgtccaggacagc
aaaatgggactttcacaagagcttgctaaaccagggactagcgtccaagcgggtgtcatt
aatagtacgaggtccaccatggatacagccgccgggacgacggcggcggcgggctcaggc
atgacagcgggacacagtcagagtaagacgggggcagccggttgtgtggtaacagtggtt
cccgatcacggggaagggatcgggaaaaccgggtcggctggtggacaaactttaaatgga
agtagcgttgtaataaactctcagaatttggtgagctcggcaagcagcacagtgcccgca
gtcacagttgtcaacaacggaccaggctccgtggtcgaaggaaacgtaatcttaccctca
acttccattcaaacctctctaatggacaatgctgtcacttcaactgtagtatcgtctcag
ccgtctgttctaaacagtgtgcccactgtcacgctcgtgaggccgcctatgcacatcgcc
ggagcagtcacctcgccgagcgggagcaatacctttctgacatcatctgtcaacgtcgct
caccctgcatgttcaggagcacaaatcaacaagtcggagtcgccaaaaacggcaatacaa
aagaccgcacaggtgacggggacggcagcagctgtagcgaaaagcccatcgactattgca
atcagtcctggtgggataagggcgatcgctcctcaggtattggccccgagacttccgcag
ccccaacagaatgctccaaacatccaaaacattcagctccccccagggatggtgttggtg
cgcagtgagagtgggcagctgttaatgatccaccagcagaccctggcccagatgcaggct
cagtcccagagccccatgaccccacggccagccacccccaccagcacgccccctgtccag
atcacctctgtacaggctccagggatgcccctcatggcccgtcaggtgacccccaccacc
atcatcaagcagggcaccccagcccagactactgtcctccagaggcctcctgtgctacag
cagaacaccattgtgctgggtggggcggctgccaccccaggtcaggccccagtgccgcct
ggctcggcggcaacagcagcagttaaccagcgagcagggacccccggagctaccgggaca
ccaggcactcccactaccactatagagaccctggagaatgtgaagaaatgcaagaacttc
ctttccacgctgatcaagctggcatccagcgggaagcagtcgtcagagaccacggccagt
gtcaaggacctggtcaagagcctgttggaaggtaagatcgaagctgaggagttcaccagt
cggttataccgggagctcaactcctctcctcagccatatcttgtgcctttcctcaagagg
agtctccctgcactgcgtcagatgacccccgactcgacagccttcatccagcagagccag
cttccccaggccagcgtccagcctgcctcctcctccacagccctgactacagtggcgctg
gggggcacggccgctgcacagagactccctcttaacagaaccaccagccccggggccaag
gggaccatgcaccagtcccctgtcatcagcccggccctgacacctcacagcaagcctggc
ctgatggtgccccagcagcagggggcgttggcgagtactcaggtaactctggcccagtcg
cccatggttactttccgaggccagtcccacagtcgcatcatcatgggacatccgcaggtg
gtcaaacagctgcaaacagttcctgtagtgaaacaagctctatcaccaggggccaaggta
acactggggcgccagtctatgctctctgttgcacagaagaacaagctgaaggaggcaagc
ggaggaaccttcaaagatgatgatgatatcaatgacgtggcctccatggctggagtcaac
ctgtcagaggagagtgcccgtatcctggcaaccaactctgagctggtgggcgcggtgact
cgctcctgtaaggacgaggccttcctccacaccacctcactaacccggagagtacaggag
atcggtaggaggtttggggtgattgacctggggccagaggttatcaactacgtttcacat
gcaacacagcagcggctgcagaacctgctggagaaagtgacggaggtggcgcagcagaaa
aacatcaccttcaaggaggatgataagtatgaacaggtgagtgacgtgcgagcccagctg
aagttctatgagcagctggatcagatggagaaacagaggaaggaggagcaggagagggag
atcctgatgaaggctgccaagtctcgatcgcggcaagaggacccagagcagcttcggctc
aaacagaaggccaaagagatgcagcagcaggagctgaatcagatcaggcagaaggaggcc
aacatgacggccctggcagccatcggccccaggaagaaacggaaaatggagtcccccgtc
aacggcgccggggctgagggttctggctctggtccctcgtcgtcgggtggggccaatagc
ggaggctccagacctcagcgccagcgcatcaccagggtcaacctcagggacctgctcttc
tgtctggagaatgagagagaaaccagtagctcacatctgctctacaaaggcttcctcaaa
taa
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