Oncorhynchus tshawytscha (Chinook salmon): 112215221
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Entry
112215221 CDS
T05605
Name
(RefSeq) integrin alpha-5
KO
K06484
integrin alpha 5
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03266
Virion - Herpesvirus
otw04145
Phagocytosis
otw04510
Focal adhesion
otw04512
ECM-receptor interaction
otw04517
IgSF CAM signaling
otw04518
Integrin signaling
otw04810
Regulation of actin cytoskeleton
otw04820
Cytoskeleton in muscle cells
otw05100
Bacterial invasion of epithelial cells
otw05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03266 Virion - Herpesvirus
112215221
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
112215221
04517 IgSF CAM signaling
112215221
04518 Integrin signaling
112215221
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
112215221
09144 Cellular community - eukaryotes
04510 Focal adhesion
112215221
09142 Cell motility
04820 Cytoskeleton in muscle cells
112215221
04810 Regulation of actin cytoskeleton
112215221
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
112215221
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
112215221
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
otw04147
]
112215221
04515 Cell adhesion molecules [BR:
otw04515
]
112215221
04090 CD molecules [BR:
otw04090
]
112215221
Exosome [BR:
otw04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
112215221
Cell adhesion molecules [BR:
otw04515
]
Integrins
Integrin alpha subunits
112215221
CD molecules [BR:
otw04090
]
Proteins
112215221
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Integrin_A_Ig_3
Integrin_A_Ig_2
Integrin_A_Ig_1
FG-GAP
FG-GAP_3
Integrin_alpha
ITGAX-like_Ig_3
Tudor_3
Motif
Other DBs
NCBI-GeneID:
112215221
NCBI-ProteinID:
XP_042155863
LinkDB
All DBs
Position
LG16:69849095..69944142
Genome browser
AA seq
1056 aa
AA seq
DB search
MGSKRYHSKTPGKLNYSLFCIGVCLIILLPLCDTFNLDVENPSVYSGPNGSYFGYSVEFY
LTNSSSVSVVIGAPKANTSQFNITEGGSVYFCPWSLGQSECHNIEFDNQGDRIVTVSGTD
YQAEVKSHQWFGATIRSHGDTILRRSLCPLYSWRTKAEKPQSDTTGTCYLSVKNFTKFVE
YAPCRTEFINQGGQGYCQGGFSADFTKDGKVVLGGPGSFFWQGQVISAAKEEIIKAYYPG
YFMQSVEGQTQTRQAQIKYDDSYHGYSVAVGEFSGDDVEDVVAGVPKGVMLYGLVSVLNG
TDLKSMLNYTGEQMGSYFGYTVSTADINNDGMSDLLVGAPMYMTRGSDGRLEEVGRVYLY
LQRGPLDLEPTLNLTGTQVFGRFGSTIAPLGDLNLDGYNDLAISCPFGGEDQQGLVLIYN
GFAGGLRNTPSQVIAGQWASGTVPASFGFSLRGAKDQDMNGYPDLIVGAFGVDKAILYRS
RPIVNTSASLTVYPTMINPEEKSCSVNNGNTTIPVSCVNLSFCLSANGKYLPDNLGFLVE
VQLDHLKHMQKGGVKRALFVDSQQAMLQRSVRVRSGERVCHETKIYLRDDKEFRDKLSSI
YISLNFSLDPQAAFDSHGLRPILNYKTTELIEQKAQILLDCGEDNICVPDLKLAVHGDRK
EVYLGDDNLLTLTFNARNEGEGGAYEAELYVLLPPEADYSGIARNNESLTQLTCSYEAEN
QTRYLSCDLGNPMKSGTSLWAGLRFTVPRLKDTRKTVQFELQIRSKNENNSHSEVVPYKL
EVVVQADVILQGVSRPDKVFFPPPNWKVSKTPQEEQDIGPVIQHVYELVNKGPSGISHTV
LQLSCPLSVQGQGLLYPLEMSTEGPLNCTTNHSINYLQLKLQQTSTEQPPLLVPGQDHHI
ERREVQRDQLAEHTNLSCSNVECWTLQCDVGLLEKGTSAILKLRSRIWAETFIERAYKGY
VLECLARFSVVKMPYAILPKEVPSGSKKVVTPLVWNKQDSQYSVPLWIIILAILAGLLLL
ALLIYVLYKLGFFKRSLPYGTAMEKAQLKPQAASEA
NT seq
3171 nt
NT seq
+upstream
nt +downstream
nt
atgggttccaaaagataccattcgaagacaccgggaaaactgaactactcattattctgc
attggggtttgtctaataattctgctaccgttgtgtgatacattcaacttggacgtggag
aacccttctgtctacagcggacctaatgggagctactttggatattccgtggaattttac
ttgactaattcttcaagcgtcagtgtagtgattggcgctcccaaggccaataccagtcag
ttcaacatcacagagggcgggtctgtgtacttctgcccatggagtctcggccaatctgag
tgccacaacattgaatttgacaatcaaggggaccgcatagtcactgtcagtggcacagac
taccaggctgaagtcaagtcccaccagtggttcggcgccaccatccgttcccacggagac
accattctgaggagaagcctgtgccccctctactcctggagaaccaaagcagaaaagcca
cagtccgataccacgggaacctgctacctctctgtcaagaacttcaccaagtttgtggaa
tatgctccctgtcgcacagaattcattaaccagggtggtcagggctactgtcagggggga
ttcagtgctgatttcacaaaggatgggaaagtggtgcttggaggaccaggcagcttcttc
tggcaaggtcaggtgatctcagcagccaaagaggagataatcaaggcctactatccaggg
tacttcatgcagtctgtggagggacagacccagaccagacaggctcagatcaaatatgac
gacagctaccacggttactctgttgcagttggggaattcagtggagatgacgtggaagat
gttgtggctggggtcccaaaaggggtcatgctctatggtttggtgtctgttttaaatggc
actgatctgaagtccatgctcaactacactggcgaacagatgggctcctattttgggtat
actgtgtccacagccgacatcaataacgacggcatgtctgacctgttggtgggagctccc
atgtacatgacccgagggtcagacggccgtctggaggaggtgggacgtgtgtacctctat
ctgcagcgtggaccactggacctggagccaactctcaacctgaccgggacccaggtgttt
gggaggtttggcagcaccatcgcacctctgggagacctcaacctggatggatacaatgac
ttggccatcagctgtcctttcggtggagaggaccagcagggattggttctcatctacaac
ggattcgccggtgggctcaggaacacaccctctcaggtcatagctggccaatgggcttca
ggcacagtgccggccagctttggattctcactccgaggtgctaaggatcaggacatgaat
ggctacccagatcttattgttggtgctttcggagttgacaaggcgattttgtacagatcc
cggcccatcgtcaacaccagtgcctccttgaccgtctatcccacaatgatcaaccccgag
gagaagagttgttcagtcaacaacggcaacaccaccatacctgtctcttgtgtcaacctg
agtttctgcctctctgccaatgggaagtacctaccagacaacctaggcttcctggtagag
gtgcagttggaccatctgaaacacatgcagaagggaggggtgaagagggctctgtttgta
gactcccagcaggcaatgcttcagaggagtgtgagagtgcggagcggagagcgtgtgtgt
cacgagaccaagatctacctgagggatgacaaggagttcagagataagctctcctccatc
tacatctccctcaacttcagtctggatcctcaggcagcgtttgactcccacggcctcaga
cccatccttaactacaagaccaccgagctcatcgagcagaaggcccagattctgctggac
tgtggagaagacaacatctgtgttcccgacttaaaactggcggtgcacggggacaggaag
gaagtgtacctaggtgacgacaacttgctgaccttgactttcaacgcgcggaacgagggt
gaaggtggggcctatgaggctgaattgtatgtgctgttacctcctgaagcagactacagc
ggtatagctcgcaataacgagagcctgacccagctgacctgtagctacgaggctgagaac
cagacccgctacctcagctgtgacctgggcaatcccatgaagtctggcaccagcctgtgg
gcaggcctgcgtttcactgtgccacgactgaaggacacacgcaagacggttcagtttgag
ctgcagatccgcagtaaaaatgagaataattcccacagtgaggtggtgccctacaagctg
gaggtggttgtccaggccgatgttattttacagggtgtctcccggccagacaaggtcttc
ttccctccacccaactggaaggtctccaagaccccccaggaggagcaggacattgggcct
gtaatccaacacgtctatgaattggtgaacaaaggtcccagtgggatcagccacacagtg
ctgcagctcagctgtcctctcagtgttcagggccagggtctcctctaccccctggagatg
tctactgagggaccactcaactgcaccaccaaccactccatcaactacctgcagctcaag
ctccagcagacttccacagagcagccgcccctacttgtgcctggtcaggatcaccacatc
gagaggagagaagtccagagagaccagctggcagagcacacgaacctgtcctgctctaac
gtggagtgctggacactgcagtgtgatgtgggtcttctggagaaggggaccagcgccatc
ctcaaattgcgctcccgcatctgggctgagaccttcatcgagagggcatacaaggggtac
gtgttggagtgcctggcaaggttcagtgtggtcaagatgccctatgccatcttgcccaag
gaggtaccgagtggatctaaaaaggtggtgaccccgttggtgtggaacaaacaagacagc
caatactctgtgcccttgtggatcatcattctggccatactggctgggcttctgctgctg
gcactgctcatctacgtcctgtacaaacttggcttcttcaaaaggtcgctaccctacggc
acggctatggagaaggcccaactcaagccccaggctgcgtctgaggcctaa
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integrated database retrieval system
