Oncorhynchus tshawytscha (Chinook salmon): 112215235
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Entry
112215235 CDS
T05605
Name
(RefSeq) neural cell adhesion molecule L1-like isoform X1
KO
K06550
L1 cell adhesion molecule
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
112215235
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
otw04515
]
112215235
04090 CD molecules [BR:
otw04090
]
112215235
04091 Lectins [BR:
otw04091
]
112215235
Cell adhesion molecules [BR:
otw04515
]
Immunoglobulin superfamily
L1 family
112215235
CD molecules [BR:
otw04090
]
Proteins
112215235
Lectins [BR:
otw04091
]
I-type lectins (Siglecs)
112215235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
ig
fn3
Ig_2
V-set
Ig_DSCAM-DSCAML_C
Bravo_FIGEY
C2-set_3
Pur_ac_phosph_N
Tissue_fac
V-set_CD47
CRLF2-like_D2
DUF4998
PTM_DIR17_Tudor
Motif
Other DBs
NCBI-GeneID:
112215235
NCBI-ProteinID:
XP_042155588
LinkDB
All DBs
Position
LG16:complement(76223871..76281104)
Genome browser
AA seq
1287 aa
AA seq
DB search
MPHTQQHQVGSRGRRPPLLLHPILLLPLFSLLLSHAPQLSQGAIHIPSNYQINEFKKPPV
ITTQPESITVFGAEDILLTCEASGNPPPDFRWTKDGEEFIPANDPGLSVSPGSGTFMKTG
VVSGPMSQYKGKYSCYAENALGTAVSNEVQLITENTPALQKEQKVKKKVEEGESVVLKCN
PPFSTVPPVIHWMDERMNHIELNDRVTQGRDGNLYFSHVTVDDTRIDYTCNAQYLSARTI
LSKEPITLTVTTSNSVVRSRRPQMMRPSGTHSTYHTLRGQSLELECIVQGLPTPTVQWVR
KDGQLSESRTSRHLFDRLLRISNISDSDGGEYQCSVNNSQGKVTHTYTVSVEAAPYWTKE
PVSQLYAPGETVRLDCQADGIPSPAVAWSINGKPITGKDPTPRRTVRDGTLILRDVVFTD
TAVYQCQAHNKHGTILVNTYIFVIELPPQILNADGQKYNFTEGQKAVLQCQTFGSPRPKV
TWERNSSASLLAEPRVNLLTNGNLQITNVSHGDEGLYTCSVSNTNLSINADLDVMNRTVI
LSPPGSLLVQPGKTAIFTCLAQVDPKLTPPHIQWKRSGQELFQSYAEDKYTFEGPDLIVA
NVQTEDEGVYTCEVITNLDRAEASGSIIIVDRPDPPTQLQVSDPKDRNVTLSWTAGDDHN
SPVIVFVVEFEDGDSKERGWEELKRVSGTHESVTISLQPYVSYRFRVISINNIGKSDPSM
PSDLHSTPPQAPDNNPENVRSESTDPDTLVITWEEMDRRVFNGPEFHYKVFWKRVVGDTT
WYSNVSTEPPYIVTEVGNFSAFQIKVQAANQKGEGPELDPVTGYSGEDIPLKAPQNVAMV
LLNSSAIRVTWEPVNEKTVRGHLLGYKIHLLRFGSRGHHQGRRAREPDTSVEVETGPKEE
KRVLGGLRPYSHYTLNVTVFNSKGEGPPSKTLSFETDEGAPGPPMSLRLDSHTGTEMTLH
WTPPAQPNGVLKGYLLQYQIIKSDSPMQVETIDDHKVTHLTLKQLDPHSRYRFYLRGRTS
AGDGEPITREGATTLDGAPPSNISLYVGEKSVNLSWVPGQRQRSVSFQVQYLNKQDGGKW
KQSEKLNSSASFYQLKGLTPGSQYRLRFTFSNNTFWETEITTKGAGVMDMQTGFATQGWF
IGLVSAIVLLLLVLLILCFIKRGKGGKYSVKDKEEGQVDSEARPMKDETFGEYSLWTRSL
ESDNEEKRTASQPSLCDESKLCISDDNLDGYNNGSIAVTEVTMEESLVSQYSRPSEATPD
PGTLQDSSPLNPNTTTNGLPNSAAILD
NT seq
3864 nt
NT seq
+upstream
nt +downstream
nt
atgcctcacactcagcaacatcaggttggcagtagggggcgacgcccccctctcctcctc
caccctatcctcctcctccctctcttctctctcctcctatcccacgccccccagctcagc
caaggagccatacacataccttctaactaccaaataaatgaatttaagaaacccccagtg
atcaccacccagcctgagtccatcactgtgttcggtgctgaagacatcctcctgacctgc
gaagcatcagggaaccctcctcccgatttccgctggactaaagatggggaagaatttatc
cctgccaatgacccgggcctgtcggtgtctccgggttctggaaccttcatgaaaactggg
gtggtgtcaggccccatgagccaatacaagggcaaatacagctgctacgctgaaaatgca
ttaggaactgctgtgtctaacgaggtccagctcatcactgagaacaccccggccctgcag
aaagagcagaaggtgaagaagaaggtggaggaaggagagagtgtggtattgaaatgtaac
cctcccttcagcactgttcctcctgtcatccactggatggacgagcgaatgaatcacatt
gagctaaatgatcgtgtaacccagggccgggacgggaacctatacttctctcacgtcacc
gtcgatgacacccgtattgactacacctgtaacgcccagtacctcagcgctcgcaccatc
ctctccaaggaacccatcaccctgactgttacaacctctaactcagtggttcggagccga
aggccccagatgatgaggccctcggggacccacagcacttaccacaccctccggggccag
agcctggagctagagtgcatcgtccagggcctccctacccctacagtccagtgggtgagg
aaggacggtcagctgtccgagtcccgtacgtccagacatctgtttgaccgtctgctgcgc
atcagcaacatctcagatagcgacgggggagagtaccagtgttcagtcaacaactcacag
ggcaaggtcacacacacctacaccgttagcgttgaagcggctccatactggaccaaggag
ccagtaagccagctctatgccccaggagagacggtgagactggactgtcaggctgatggc
atcccgtctcctgctgtcgcctggagcatcaacggaaaacccatcacaggcaaagaccca
acccctaggcgtactgtgagagatggaactctgattctgagagatgtggtcttcactgat
acagcagtctaccagtgtcaggcccacaacaaacacggaaccatcctagtcaatacctac
atcttcgtcatcgaactgcctcctcagatcctgaatgctgacggacagaagtacaacttc
acagagggacagaaggctgtactgcagtgtcagaccttcggctctcccagacctaaagta
acatgggagaggaacagcagcgcttctctactggctgagcccagggttaacctgctgacc
aatggaaacctccagatcaccaacgtctcccacggcgacgagggcctgtacacctgctcc
gttagcaataccaacctgtcaatcaacgctgacctggatgtcatgaacaggacagtgatc
ctgtctcctcctgggtctctgcttgttcagcctggtaagacggccatctttacctgcctg
gcacaggtggaccccaaactgacccctccacacattcagtggaagaggagcggacaggaa
ctctttcagtcatacgccgaggacaagtacacatttgagggcccagacctgattgtggcc
aatgtgcagacagaagacgagggtgtttacacctgtgaggtcatcaccaacctggacagg
gctgaggccagcgggtccatcattatagtcgaccgtccagacccccccacccagctccag
gtctctgaccctaaggaccgcaatgtcaccctgagttggaccgcaggagatgaccacaac
agccctgtcatagtgtttgtggtggagtttgaagatggtgactctaaggagcggggttgg
gaggagctgaagagagtcagtggaactcatgagagcgtgaccatttctctgcaaccatac
gtgtcctaccgcttccgggtcatctccatcaacaacatcgggaagagtgaccccagcatg
ccctctgaccttcacagcaccccacctcaagctccagacaataacccagagaatgtgagg
agtgagtctacagacccagacaccctggtcatcacatgggaggagatggacaggcgtgtg
tttaacggcccagagttccactacaaggtgttctggaaaagggtggtaggtgacacaacc
tggtactctaatgtctccactgagccaccgtacatcgtcactgaagtgggcaacttctcc
gcctttcaaatcaaagttcaggctgccaatcagaaaggagagggacctgagctagaccct
gtgactggttactctggagaggacatccccctgaaggctcctcagaatgtggctatggtg
ctgctcaacagttcagccatcagggtgacatgggaaccagtgaacgaaaagactgtcaga
ggacacctgctgggatataagatccacctgctgaggtttggctccaggggccaccaccaa
ggccgtagggctagagagccagacaccagtgttgaggtggagacagggcccaaagaggag
aagagggtcctggggggactcagaccctactctcactacaccctcaatgtcactgtgttc
aacagcaagggagagggccccccctccaagaccctgtcctttgaaactgatgagggagct
cctggccccccgatgtccttacgcctggacagccatacaggcacagagatgaccctacac
tggacacctcctgcccaacccaacggagttctcaaaggatacctgctgcagtaccagatc
ataaagagtgacagcccgatgcaggtggagacgatagacgatcacaaggtcactcacctg
accctgaagcagttggaccctcacagccgctaccgcttctacctgagggggcgcacctcg
gctggggacggagagcctatcaccagggagggagctaccacactggacggagctcctccg
tccaacatcagcttgtatgtaggagagaagtctgttaacctgagctgggtgccaggccag
agacagaggagtgtgagcttccaggtccagtacctcaacaagcaagatggtgggaagtgg
aagcagtctgagaagctgaactcgtctgcatcattctaccagctgaaaggtctgaccccg
gggtcacagtaccgcctcagattcaccttcagcaacaacaccttctgggagactgagatc
accacaaagggagcaggggtgatggatatgcagacaggctttgctactcagggctggttt
attgggctcgtgagcgccatcgtgctgttgctgctggtgctgctcatcctctgctttatc
aagaggggcaaagggggaaagtattcagtcaaagataaggaggagggtcaggtagactct
gaggcgcgccctatgaaggatgaaacattcggagagtacagtctttggacaagatctctt
gagagtgacaacgaggagaagcggacagccagccagccgtctctgtgtgatgagagcaaa
ctgtgtatcagtgacgacaacctggatggctataacaacggtagcattgctgtcaccgag
gtgaccatggaagaatccctggtcagccagtacagccgacccagtgaagccaccccggac
ccgggcacactgcaggacagctcccccctcaatcccaacaccaccaccaatggcctgccc
aactcggccgccattttagattag
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