Oncorhynchus tshawytscha (Chinook salmon): 112215324
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Entry
112215324 CDS
T05605
Name
(RefSeq) lethal(3)malignant brain tumor-like protein 4 isoform X1
KO
K24387
lethal(3)malignant brain tumor-like protein
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
112215324
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112215324
03036 Chromosome and associated proteins [BR:
otw03036
]
112215324
Transcription factors [BR:
otw03000
]
Eukaryotic type
Zinc finger
Cys2HisCys zinc factors
112215324
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
112215324
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MBT
zf-C2HC
SAM_1
SAM_2
MSL3_chromo-like
SAM_PNT
Motif
Other DBs
NCBI-GeneID:
112215324
NCBI-ProteinID:
XP_042154711
LinkDB
All DBs
Position
LG16:complement(11697072..11829237)
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AA seq
666 aa
AA seq
DB search
MMQAEDRKKIKLSVSSSKGVVEEYCLRERPKEDAAKMKNKVTSTQAVIGKKKAWSWDQYL
GEEKAIAVPLRLFTEAQSFPSSRSGFKAGMRLEGIDPLHPSMFCVLSVAEVIGYRLRLHI
DGYSECYDFWLNADSADIRPAGWCESTGHKLHPPKGYNEVEFNWDKYQESCNAPAAPQNL
FESHNSTTSTSKFQVGMKLEAVDRKNPCLVCVASVADIVDNRFLVHFDNWDDTYDYWCDA
SSPHIHPVGWCQDHGRPLTAPQGHPNPEHFLWEEYLEDNGSTAVPSQAFCMRAPHSFPVN
MKLETVDRRNPMLVRVATVSDTEDYRVKIHFDGWHEKFDFWVDSDLPDLHPVGWCARTGH
PLEPPLSHAGSSDLKSSVTQGVCPTPGCRGVGHIKGAKYTGHHSAFGCPYSDINMKKEAV
LPDRLGGEKQITFVPVHFVQKTKRLCTADDQEEATPPQDVPMETRVMLSGYEGAARLRGR
PPANPLVKREPSEEPATAQGQKLLSLGKRGRLPSRLTTKYLRVKEEDEEIDLNSMIEESS
LDSLQQALHQSVFLSAMSAQPGRDLPLCWEQHCKLLPGVAGLQASCVAHWTVDEVADFIH
SLPGCDEQANQFKEEQIDGKALLLLTQRDIVKIMSVKLGPALKIYNSILMFKHAEDNQSA
ASNANT
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atgatgcaggcagaggacaggaagaaaatcaaactgagtgtgagttccagcaaaggcgtg
gtggaggaatattgtctgagagagcgaccaaaagaggacgcagcaaaaatgaagaacaaa
gtgaccagcacacaagcagtgattggtaagaagaaggcctggtcgtgggatcagtacctg
ggagaggagaaggccatagcagttcccctcagactgttcactgaggcccagtcgttcccc
tcgagcagaagtggcttcaaggctgggatgaggctggaggggatcgaccctctccacccc
tccatgttctgtgtcctgtctgtggcagaggtgattggctaccgattgcggctccacatc
gacggctactctgaatgctatgacttctggttaaacgccgactctgccgacatcaggcca
gccggatggtgcgagtcgacaggacacaagctccacccaccaaaaggctacaatgaagtc
gagtttaactgggataaataccaagagtcttgtaacgctccagctgcaccacagaatctg
tttgaatctcataacagtaccacgagcacctctaagtttcaggtgggcatgaaactggag
gcagtggacaggaagaacccgtgcctggtgtgtgtggcctcggtggccgacatcgtggac
aatcgcttcctggttcactttgacaactgggacgacacctacgactactggtgtgatgcc
agcagccctcacatccacccagtgggctggtgccaggaccacggacgacctctcactgca
cctcagggacaccccaatccagaacatttcctgtgggaggagtacttagaagacaatggt
tccacggcagttccaagccaggctttctgtatgagagctcctcacagtttcccggtgaac
atgaagctggagacggtggacaggaggaaccccatgctggtccgtgtggccaccgtctca
gacactgaagactacagggtcaagatccattttgatggctggcacgagaagtttgacttc
tgggtggactctgacctgccggaccttcaccctgtgggctggtgtgcccggacaggtcac
cccctggaaccccccctctcacatgcaggatcttctgaccttaagagctccgtgacccag
ggagtgtgtcccaccccgggctgcaggggcgtgggccacatcaaaggggccaaatacaca
ggacaccacagtgcctttggctgtccctactctgacatcaacatgaagaaggaggccgtg
ctgcccgaccgtctgggcggcgagaagcagatcacctttgtccctgtgcactttgtccag
aagaccaagaggctgtgcaccgccgatgatcaggaggaagccactccaccccaggatgtt
cccatggagaccagggtaatgctgtcggggtacgagggggctgctcgcctcagaggtcgc
cccccagccaaccccctggtgaagagagagcccagcgaggaaccagccacggctcaggga
cagaaactgctttctctggggaagagaggccggctacccagcagactcacaactaaatat
ctgcgagtcaaagaagaggacgaagagattgacttgaatagcatgatcgaagagagcagt
ctggatagcctgcagcaggccctccaccagtctgtgttcctgtcggccatgtcggctcaa
cccggacgggacctacccctgtgctgggagcagcactgcaagctgctgcctggggtggcc
ggattgcaggccagctgcgtggcccactggaccgtggatgaggtggctgacttcatccac
tctctccccggctgtgatgaacaagccaatcagttcaaagaggagcaaatcgacgggaag
gccttgttgctgctgacccagcgcgacatcgtcaagatcatgagtgtaaaactcggccct
gcccttaagatctacaactctatcttaatgttcaagcacgctgaggacaaccaatcggca
gccagcaacgccaacacatga
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