Oncorhynchus tshawytscha (Chinook salmon): 112215394
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Entry
112215394 CDS
T05605
Symbol
spata13
Name
(RefSeq) uncharacterized protein spata13 isoform X1
KO
K05769
Rho guanine nucleotide exchange factor 4/29
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
112215394 (spata13)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112215394 (spata13)
Membrane trafficking [BR:
otw04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
112215394 (spata13)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RhoGEF
PH
SH3_1
SH3_9
SH3_2
Motif
Other DBs
NCBI-GeneID:
112215394
NCBI-ProteinID:
XP_024230164
LinkDB
All DBs
Position
LG16:16298707..16331520
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AA seq
1333 aa
AA seq
DB search
MRRAWQSDGTPSTSEDSLSYRRGSTSDPDLRPPARPRPLSDFYPLKAHVSMAVPPSLLSG
CDAQVQPMTCDFNSEESRLNGFNTATWSSPVIGHPSRIMRLFSTQKKCTVPGDSQGSTRP
LSFQGPPSSAGVPQVWPGLSGLTVMGSFKKLRSSVLQGIQNRGTANQDDEYTSEAIQGGD
NVMVTTNQSPRLRYGKGYRVSNGVSIGQQMAGLSPYGSDNEDEEEVVDEEDGLQRNTWFS
RSIRRAYGAGRISLLDAGEGKRGEGPGLGVSTNQRPGSGSVSEVNLHLEESVNENVNALS
RLSKSADNLHLFKGPFRHKVPCPSPQTDSPGANGDPSIQRTASASSGDLRDRSQSPVHFR
NPVGAKGHMLKLVGSITDLTVRRRPNPPPVTSPGSPVTPLSPLSRLHDDYSRRTPCLPAS
DRQRRPSPARTRAAAERKRNSTSVRLEHTPTIHPQPQSECHPALFPIEPQEGPDHVFAFP
SINQPFTTTSFSLSARAQRSSLCEGDRPQERQGDGWRARCDSAPHPQREPCGSHSKHQPD
VNAEGKTEPKQCVWTRPDQDQEDQQVKGHLWCTLDEQGREALLGGEETPPPSATSTPSLT
PTWPPESPTSPMSPTKIGSTETSTSFIPRQRAGRSRPRPISDYAQLVARKYAIPEEETEL
HSKERTTNATLYQDGKSNGGSQDSDSTENYNMNGDLPCRRRQPMSVIGGAEEREDRLPSP
LSRPPVPSHQVPPYKAVSARFRPSTFSQSTPIGLDRLGRRKLHRVLSVEADAGSERSAAV
DGDSVSEEEGSFDELSDVTTYLQPGVELSALSQWISQGQAVYAEALWDHVTMEEQELAFK
AGDVIRVLEAPHKDWWWGMGADREAWFPSSFVRVRVNQEEDSGAESVESCALDQEDPHTD
TRDTHTHSAEHREQMRTNVVKEIMNTERIYIKHLRDICEGYIRQCGKHPGMFTELQLKTI
FSNIEDIYKFQRQFLKDLERKYNTDQPHLSEIGACFLLQGEGFSIYSEYCNTHPAACGEL
QRLMKLGRYKHFFEACRLLQQMIDISIAGFLLTPVQKICKYPLQLGELLKYTPKDHSDYG
GVSDAYEAMKNVASLINEGKRRLESVDAIAHWQVAILRWEGADVLECSSELIHSGELTRI
VRQGNKTQQRSFFLFDHQLVFCKKDVLRRDLLHYRGRLDMDNTSVLQMPDGRDPELGILL
RNALRLRNSSTLETLCYLCCRKPQDRQRWLQAFARERQRVQEDQEMGMKISETQRKQAIF
NARRSKQGKMKSIGYSGSVPPHHHHHQPLHPIHQRHVTVPTSVPQQQVFTLAEPKRKPAH
LWYTFTRHALFRK
NT seq
4002 nt
NT seq
+upstream
nt +downstream
nt
atgagaagggcatggcagagcgatggaaccccgtccaccagcgaggactctctctcctac
cgccgtggctccacatccgaccctgaccttcgacctccagcccgaccacgacccctcagc
gacttttaccccttgaaggctcatgtttcgatggcagtgcccccgtctctgctgtctggg
tgtgatgctcaggtacagcccatgacctgtgactttaacagtgaagagagtagactgaat
gggttcaacacagccacctggtccagccctgtgataggccacccctccaggatcatgagg
ctcttctctacccagaagaagtgcactgttcctggggacagtcagggctccaccaggccc
ctctctttccagggccctccatccagtgccggggtcccgcaggtttggccaggcctgtca
gggctgaccgtcatgggctcctttaagaagctacgctcctcagtgctccagggtatccag
aaccgagggacagccaatcaggatgacgagtacacctcggaagccatccagggtggagat
aatgtaatggtcacaaccaatcagagccctagacttagatatgggaagggctatagagtc
tccaatggggtgtctattggccaacagatggctgggttgagcccttatggttctgacaat
gaagatgaggaggaggtagtagatgaggaagatggactacagagaaacacatggttctcc
aggagtatccggagagcgtacggggcggggcgcatctcactgctggacgctggggagggg
aaacgaggggagggtccaggactgggtgtttcaaccaatcagaggccaggctccggttca
gtgtcagaggtgaacctccatttggaggagagtgtgaatgaaaacgtgaatgcgctaagc
agactgagcaagagtgcagacaacctacacctcttcaagggccctttcagacacaaagtc
ccctgtccctctcctcagacagactctccgggtgccaatggggaccccagcatccagaga
acagccagtgcctcatccggtgaccttagggaccgcagccagagccctgttcactttagg
aatccagtgggggccaagggccacatgttgaagctagtgggcagtataactgacctgacc
gtgagacgcagacctaacccgcctcctgtcacctccccgggctcccccgtgacccccttg
tcacccctcagccgtctccatgacgactactcacgccgcacgccctgcctgcccgccagc
gaccgccaacgccggccctcgcccgccagaacgagagctgcagcggagaggaagaggaat
agcacttcagtacgactggaacacacgcctaccatccacccccagccccagtctgagtgc
cacccagccctgttccccatagagccccaggagggaccagaccatgtcttcgcttttccc
agcattaaccagcctttcactacaacctcattttccctgagtgctcgtgctcagaggagc
agcctgtgtgagggggacaggcctcaggagagacagggagatgggtggagagcacggtgt
gattccgctccacacccccagcgggagccctgtgggagtcacagcaaacaccagccagac
gtcaacgcagagggaaagacggaaccaaagcagtgcgtatggaccagaccagaccaagat
caggaggaccagcaggtaaaaggacatctctggtgtacgttagacgaacagggcagagag
gcactattagggggtgaagagacgccccctccttcagccaccagtaccccttctctcaca
ccaacatggcccccagagtctccaacttcacccatgtcaccgacgaaaataggttccaca
gaaacgtccacgtccttcatccccaggcaaagggcgggccgatcgaggcctcgaccaatc
tctgactacgctcagctggtagccaggaagtacgccatccccgaggaggagacggagcta
cattctaaggagaggactacaaatgcaactctctatcaagacggcaaaagcaatggaggc
tcgcaggacagtgacagcaccgagaactacaatatgaatggagatctcccgtgccggagg
agacagccaatgtctgttattggaggagctgaggagagagaggaccgtctgccttctccc
ctgtcgcgcccccctgtcccgtcccaccaagtgcccccctacaaagcggtgtcggccagg
ttccgcccctccaccttctcccagagcacccccatcggactggaccgcctcggacgacgc
aaactacacagagtcctcagtgttgaggcagacgccggctcagagcgttctgcagcggtg
gatggtgacagtgtgagtgaggaggaggggagcttcgatgagctcagcgacgtcacaacg
tacctgcagcctggggtggagctgtctgctctcagccagtggataagccagggtcaagcg
gtgtatgcggaggccctgtgggaccatgtgacaatggaggagcaggagctggcgttcaag
gcgggggatgtgatccgggtgctggaggcccctcacaaggactggtggtggggcatgggg
gcagacagggaggcctggttcccctctagcttcgtcagggttcgtgtgaaccaggaggag
gactcaggagcagaaagtgtagagagttgtgctctggaccaagaggacccacacactgac
acccgggacactcacacacacagcgccgagcaccgtgagcagatgaggactaacgtggtc
aaagagatcatgaatactgaacgcatctacatcaaacatctccgggacatctgtgagggc
tatatccgtcagtgtggtaaacacccgggcatgttcactgagctgcagctaaagaccatc
ttcagtaacatcgaggacatctacaagttccagagacagttcctcaaagacctggagagg
aagtacaacacagaccagcctcacctcagtgagataggagcctgtttcctcttacagggg
gagggtttttccatctactctgagtactgtaacacccaccctgcagcgtgtggggagctg
cagcgcctcatgaagctgggcaggtacaagcacttctttgaggcctgccggctgctgcag
cagatgattgacatctccatcgccggcttcctgctcacgcctgtccagaagatctgcaag
taccccctgcagctgggagagctgctcaaatacacccccaaagaccacagtgactatggt
ggagttagtgacgcgtacgaggcgatgaagaatgtggcgagcctgatcaacgaggggaaa
aggaggctggagagtgttgacgccatagctcactggcaggtggccatcctacgctgggag
ggagcggatgttctggagtgcagctcggagctgatccactctggggaactcacccggatt
gtccggcagggcaacaagacacagcagcgcagcttcttcctgttcgaccaccagctggtg
ttctgtaagaaggacgtattgcgccgcgacctgctgcactaccgtggtcgcctggacatg
gacaacacatcggtgctgcagatgcccgatggcagggaccccgagctgggcatcttgctg
aggaacgccttgcggctccggaacagctctaccctggagaccctgtgttacctctgctgc
aggaaaccccaggatagacaacgctggctgcaggccttcgccagggagagacagagggta
caggaggaccaggagatgggaatgaagatcagtgaaacgcagagaaaacaagcaatcttc
aatgcaagaagatccaaacaagggaaaatgaagtccataggctactctggctctgtcccg
ccccaccaccaccaccaccaacccctgcatccaattcaccagcgccatgttactgtgcca
accagtgtgcctcagcagcaggtgttcacattggccgagcccaagcgaaagcccgcccac
ctgtggtacaccttcacccgacatgccttgttcaggaagtga
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