Oncorhynchus tshawytscha (Chinook salmon): 112215395
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Entry
112215395 CDS
T05605
Symbol
pan3
Name
(RefSeq) LOW QUALITY PROTEIN: PAN2-PAN3 deadenylation complex subunit PAN3
KO
K12572
PAB-dependent poly(A)-specific ribonuclease subunit 3
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112215395 (pan3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112215395 (pan3)
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112215395 (pan3)
mRNA degradation factors
3'-5' decay
Pan complex
112215395 (pan3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pan3_PK
zf-CCCH
zf-CCCH_4
zf_CCCH_4
Torus
Pkinase
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
112215395
NCBI-ProteinID:
XP_042154774
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Position
LG16:complement(16455978..16479594)
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AA seq
834 aa
AA seq
DB search
MNSGLPASAAPLGGVGIPCVKVKFCRYYAKDKTCFYGDECQFLHEEPSMANMSLHGGGSP
VPLSMSGGAVTAAGYPLSAPPACPVGVPTVTKKSDSLGSAGTALDGQLLTIPGMEGGTDA
NLTNSYFSSSFIGVNGFGSPAESKYSMMQRMTSSSSSSSSPSLLDDGEKNFSHSAHDLFH
GTLAVGPGQSCGSMENSPWTTQSSFPLPLCPLPDPVSSPMSSLFSDFGALSISQRRKAPN
PTANEFIPKGVPRMATMVQSSVPAFPLPLFPHPSLSSSTAAALAPGMSLSAGSSPSTPPK
XHPHTSPAPRRRSHTPNPNNPNPANYMVPTSVSDQGAHIIQKETVGGTTYFYTDNTPAPM
AGMVFPTYHIYPPTAPHVAYMQPKANAPSFFMADELRQELINRHLITMAQIDQSENTGVP
SEVDSYHSLFPLEPVPPPNRLQKTSNFSYITSCYKAVNSKDDLPYCLRRVHGFRLVNTKC
MMLVDMWKKIQHSNSVTLREVFTTKAFGDHSLVFSYDFHAGAETMFSRHFNDPTADSYFT
KRKWGQHEPPPPRQHAGLLPESLIWAYIVQLSSALRTIHTAGLACRVMDPSKILITGKTR
LRVNCVGVFDVLTFDNSQTNHVTLMPQYQQADLISLGKVVLALACNSLAGIQRENLQKAM
ELVSINYSSDLKNLILYLLTEQSRLRSVNDIMPMIGARFYTQLDASQMRNDVIEEDLAKE
VQNGRLFRLLAKLGTINERPEFQKDRTWSETGDRYLLKLFRDHLFHQVTESGTPWIDLSH
IVSCLNKLDAGVPEKINLVSRDEKSVLVVTYSDLKRCFDSTFQELQQAAATGPL
NT seq
2505 nt
NT seq
+upstream
nt +downstream
nt
atgaacagtggactcccagcttcagctgctccgctcgggggtgtcggaattccctgcgtc
aaggtgaagttctgccgatactacgcaaaggacaagacttgcttttatggggacgagtgt
cagtttttgcacgaggaaccgtccatggcaaacatgtctcttcatggtggaggaagccct
gtccctttatccatgtcaggaggagccgtgacggcagcggggtatccgcttagtgcaccc
ccggcctgcccggtaggggtgccgaccgtcaccaaaaagagcgactctcttgggtctgca
ggcacggctctggatggacagctgttaaccatccctggtatggagggtgggactgatgct
aatctgaccaactcctacttcagcagcagctttattggggtcaacggcttcgggagcccc
gcagagtctaaatactcaatgatgcagagaatgaccagcagcagcagcagcagcagttct
cccagtctccttgatgatggtgaaaagaactttagccacagcgctcacgatctattccat
ggaaccctggcagttggaccaggtcagagttgtgggtcgatggaaaactctccgtggaca
acacagtcttcattccctcttcctctatgtcctcttcctgatccagttagttctcccatg
tcctcactcttcagtgactttggtgctctgagcatatcacaaaggagaaaggctcccaac
cctacagccaatgagttcatccctaagggggttccccgcatggccactatggtccagtcc
agtgttccagccttccccttgcccctcttcccccaccccagcctcagcagctccaccgcc
gctgccctagcacccgggatgtctctttctgcagggtcctccccctccactcccccaaaa
nntcacccccacacctcccctgcccctcgccggcgcagccacacccccaaccccaacaac
cccaatccggctaactacatggtgcccaccagtgtgtctgaccagggggcccacatcatc
cagaaggagacggtgggggggaccacctacttctacaccgacaacacccccgctcccatg
gccgggatggtgtttcctacctaccacatctacccccccactgctccccacgtggcctac
atgcagcccaaagccaacgctccgtccttcttcatggctgatgaactccgacaggagctg
ataaacagacatctaatcaccatggctcagatcgaccagtcagagaacaccggtgttccc
tctgaggtggatagctaccacagcctgtttcccctggagcctgtcccccctcccaaccgc
ctgcagaagaccagcaacttcagctacatcacttcctgctacaaggccgtcaacagcaag
gacgacctgccttactgcctgaggagggtacatggtttcaggctggtgaacaccaagtgt
atgatgctggtggacatgtggaagaagatccagcactccaactctgttaccctgagggag
gtcttcaccaccaaggcctttggagaccactcgttggtgttttcctatgacttccatgcg
ggggcagagaccatgtttagcaggcacttcaacgaccccactgccgactcctacttcacc
aagaggaagtggggacagcacgagcccccaccaccccggcagcatgctggtctgcttcct
gagtctctgatctgggcctacatcgtccagctgagctcagctctcagaaccatccacact
gctggcctggcctgcagggtcatggaccccagcaagatcctcatcaccggcaagaccagg
ttacgggtgaactgtgtaggggtgtttgatgtcttaacgtttgacaacagtcagaccaac
catgtgaccctcatgccacagtaccagcaagcggacctgatatccctgggcaaggtggtg
ttggccctggcctgtaactctctggctggcattcagagagagaacctgcagaaggccatg
gagctggtgtctatcaactactcatcagacctcaagaacctcatcctgtatctgctgaca
gagcagtcaaggctgcgaagcgtcaatgacatcatgcctatgatcggagctcgcttctac
acacagctggacgcatcacagatgaggaatgatgtcatcgaggaggaccttgccaaggag
gtccagaatggtcgtctcttccgtctgttggctaaactgggcaccatcaacgagaggcca
gagtttcagaaggaccgtacgtggtcggaaacgggggaccggtacctgctgaaactgttc
agagaccacctgttccaccaggtgacggagtctgggaccccctggatagacctcagccac
atcgtctcctgcctcaacaaactggacgcgggcgtgcctgagaagataaacctggtatct
cgtgatgagaagagtgttctggtggtgacctactcagacctgaagcgctgcttcgacagt
accttccaggagttgcagcaggcggctgccactggccccctgtag
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