Oncorhynchus tshawytscha (Chinook salmon): 112215518
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Entry
112215518 CDS
T05605
Name
(RefSeq) uncharacterized protein LOC112215518 isoform X1
KO
K05769
Rho guanine nucleotide exchange factor 4/29
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
112215518
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112215518
Membrane trafficking [BR:
otw04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
112215518
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RhoGEF
Apolipoprotein
PH
SH3_1
DUF5403
SH3_2
SH3_9
MAP6
PIN_8
Motif
Other DBs
NCBI-GeneID:
112215518
NCBI-ProteinID:
XP_042154914
LinkDB
All DBs
Position
LG16:22375414..22538417
Genome browser
AA seq
2997 aa
AA seq
DB search
MDDNNNDNARCKSSEDNHRDSPVDSGATGDVGAGGLEEVQLHLTCLPERYMMAKFTLSAY
MLCWAALKLYQRLRCTPATQEVKQTQEALEDSEGLRNPEGLGLEVEDGDLGAGDSQDWSE
DGGRTRDGGVDITSSEEYFDSRSWHSDTLCDTLSDLSPDSSEDSLSAILGVEDVRTGWKN
SRYHTAGDCRARRTAERSQHSHSTENAETDVRGPSKEKHNQTCTETAQSQLGNTEKKQHN
HRTETQHSTELHNQLSTVIHKTGVTTQHNQGKVSTEVRITEITGNQNAPTLVLHTESHKP
NRSDRHKINIAQSTETFAQRNSTEETSRETRSLSSTEKQSTGFENTACTEKQSTGFENTA
CTEKQSTGTKCTGICKQHSVDIQSIDLLSTLHSVEKENSQIHNRHLEQVSLASQDISRAY
GEETTNQHSSETHCIDTHNTTDTQCSDISGKHVTLCRDTPNTLKAETHCRLAHNNHSSDI
HLSDTQSELIPEHPTTDTHSTETHTTETIYTDTQPTETERSSTRNTETERSSTPNTDTER
SSTPYTETHSPVPHTLETTRNVHSASPCVGILNGPVTKTQPQACLGATKLHIEACVSGVR
CQEEHEVCVTNRNSAEPTEPSNTVNGICPIISSVEAGLPLEAGLTVDVGLPEEAGLPYLL
DARVPIPVPDPYLSPSLNRKGINQSESQLASPVLPTGLESGGITEIQQRQQQQTQHSSSQ
PQEKDAVQTQGLIPELQDQGGSSPETPRDSEHSPGEHEWDEAWLREGSTSVELKPGFAHP
QSDTEGGIEECLPSNPYSLPHIDRSLCSDSLGSDDSEHSQLKTSDREYRTGSTHSLSVER
EEEKEEEREEEEDSHVYSQQEQAVESTSCPYSAQSNTVIAELSDCTDTVIAELSDRTDTV
IAELSDRTDTVIAELSDRTDTVIAELSDRTDTVIAELSDRTDTVIAELSDRTDTVIAELS
DHRDTVIAELSDHTDTVTAELSDHTDTVIAELSDRTDTVTAELSDRTDTVTAELSDRTDT
VTAELSDRTDTVTAELSDRTDTVIAELSDCTDTVIAELSDRTDTVIAELSDRTVTVIAEL
SDRTNTVIAELSDCTDTVIAELSDRTDTVIAELSDRTVTVIAELSDRTNTVIAELSDSDH
IGLPSTEETEDAIVPFSPTGVFKEITSDLLVDLSSQGVSSDIGQGSTQPTETESLQGDST
EPSALDQEATPLRRIKITLGTDSTVCNDEVQSQLKELDIHHSISGPELSLCTVPPSILPL
SCLSDSNNNTKASEGSVLGSPCTRGKGPEQWPSKVEVAPQSSSEEGGDKTHDESPSLTEP
STFTSDLLGETPDSPLEYPPEDSEEFLSYLAYKHYWSSEDSAVSGLGDEFHFSLAEVEEL
ERLQGEGHGDVPYQNHTDTAGCRRDISNHTDTTGCRRDISHHTDTTGCRRDISNHTDTTG
CGRDISNHTDTTGCGRDISNHTDTTGCGRNISNHTDTTGCGRNISNHTDTTGCGRDISNH
TDTTGCGRDISNHTDTTGYRRDISKHTDTTGYRRDISKHTDTAGCGEVVEGVVHSNCAAN
SPSDLSEPLASYLETRGLLLDSAEKEEVQQSSPHQSPNPPSEGDRQDCSKSPGALGLEDS
LFAEESSSYSTYLQTSSHPALLQQDRGVRIVRYPYSDVSLNLLSLSSLEPILETDSDRSL
DNSGIVEDVTGVEEEGEEEEEEEGEEEEQRQSFRMRPTEKDRDSVVLSGDIILSNSTSGL
ESPSLCLPEDSSSIESSEHQLDALTFDPDDLRVMTLPHDRDHASSERRSSPTPTSVSYDF
DTTSTNSEETEESILPVSGGNTNLHKPMKSNSKDSQAGRSKSSKFSVFAKMPSFRKGKSL
KNAKEEDLPRDSPDLGLSRDMGGGQVGQGGDTSDDDNVFLKGDILSQTVQQPFSSGLGGR
YETEQEDYSFFPSTPRTRHVRLLFRDGPGDTPLTSQPGGLRHNQPGPPEGLHGYKRSKSS
DSLNLRMRFAQAHKSLSSLFESRSMDKENEEEQVNIETGNEGEVGRAKQSWRRLKRERAK
EAELLRRTLSVPVGDGVKGEDGEDGGVRTPRQTHSDYASRSASVLSVPGSPSSLRALCLT
DPLTKRGFQDSHSVVGENTPLGCKSEGQRRKGKVPPNGLSINFSDSGPHSSDDSEAPPTN
DSSPLSPMSPASLATLANQLSWSSSRSPGGAYESTASSMAATPDTPVRPMSPKPHSPRPA
AQHRPFRYPQSASARASALSLLLMAQSASVEGLSDPPEKPKTLKPRAGPLGSSSLSPLED
SGVDSQSQISLLTPMSINQFETQGGCRPTSQAGGEKRLAELKSPGSGLVTTASALRPPPG
HRPNRERDRGPRRHRCSSDDLWIEEEKRRKRKLARVVRGSLGQLNTHCPEDLEKARARVS
LSTMEEFSGIPLKAHCFSQSTPIGLDCLGWRRRISYPSVIVPDGGGEKAGLGDDLGSDED
LYEEFRSSGHRCGHPGGGGEQLAINELISDGSCVYAEALWDHVTMDDQELGFKAGDVIEV
VDATNKEWWWGRILDSEGWFPASFVRLRVNQDEPMEEYLAQLEEAGAGEVDRPGVGLILG
PGLPCKDQMRTNVINEIMSTERDYIKHLKDICEGYIKQCRKRIDMFTEEQLRCIFGNIED
IYRFQKKLLKGLEKRFNKEQPHLSEIGSCFLEHQTDFQIYSEYCNNHPNACVQLSRLMKT
NKYVFFFEACRLLQKMIDISLDGFLLTPVQKICKYPLQLAELLKYTNPQHRDYKDVEAAL
NAMKNVARLINERKRRLENIDKIAQWQSSIEDWEGEDILSMSSDLIFSGELTKISQPQAR
SQQRMFFLFDHQMVYCKKDLLRRDMLYYKGRMDMDLMEVVDVEDGKEKDFNVSVKNALKL
RSLAGDEVHLLCAKKPEQKQRWLRAFQDERTQVQHDLETGFSITEVQKKQAMLNACKSHP
AGKPKAVTRPYYDFLLRQKHPSLPSTVPQQQVFMLAEPKRKATTFWQNIGRLTPFKK
NT seq
8994 nt
NT seq
+upstream
nt +downstream
nt
atggatgataacaacaatgacaacgctcgctgcaagtcgtctgaggataaccaccgcgac
tcaccagttgacagcggggcaacaggcgatgttggagctggaggtctagaagaagtacag
ctgcatctcacgtgcctaccggagcggtacatgatggccaagttcactttatcagcctat
atgctctgctgggcagcgctgaaactctaccagagactacgatgcactcctgccactcaa
gaggtgaaacagacccaggaagctcttgaagactcggagggactcaggaacccagaagga
ttaggattagaggtggaggacggggatttgggtgccggtgactcccaggactggagcgag
gacggggggaggaccagggacggtggggttgacattacgtcgtcggaggagtactttgac
tcgcggtcgtggcacagtgacacgctgtgtgacactctgtcagacctgagcccggacagc
agcgaggactctctgtctgccatactgggggtggaggacgtacgcacgggatggaagaac
agcagataccacaccgctggggactgtagagccagacgcacagccgagaggagccagcac
agccacagcacagagaacgcagagactgacgtacgcggacccagcaaagagaaacacaac
cagacctgcacagagacagcacagagtcaacttggcaacacagagaagaagcaacacaat
cacaggacagaaacacagcacagcacagagttgcacaatcagctcagcacagtgatacat
aagacaggagtaacaacccagcacaaccaagggaaagtcagcacagaggttcgtatcact
gaaatcacaggtaatcagaatgcaccaacgttagtgcttcacacagagtcacacaaaccg
aatcgctcagacagacacaaaatcaacatcgcacaaagcacagaaacatttgcacagaga
aacagcacagaggaaactagcagagagacacgatcgctgagcagcaccgagaaacagagc
acagggttcgaaaacacagcttgcacagagaaacagagcacagggttcgaaaacacagct
tgcacagagaaacagagcacaggcactaaatgcacagggatatgtaaacaacatagcgta
gatatacaaagtatagatctgctgtccactctacacagtgtagagaaagagaattcacaa
atacacaaccgtcacctagagcaggtaagccttgccagccaggatatatctagagcctac
ggagaggagacaaccaatcaacacagttcagagacacactgcatagacacacacaacaca
acagacacacagtgttcggacatatctggcaaacacgtgacactttgcagagatacaccc
aacacactcaaagcagagacacactgtaggctcgcgcacaacaatcacagctcagacata
cacttatctgacacacaaagtgaacttatcccggagcatcccacaacagacacgcacagt
acagaaacacacaccacagagacaatctatacggacacacaacccacagagacagagagg
agtagcacacgcaacacagagacagagaggagtagcacacccaacacagacacagagagg
agtagcacaccctacacagagacacacagcccagtgccacacactttagaaaccacaagg
aacgtccattcagccagtccatgtgtgggtatcctcaacggacctgtcacaaagacccag
cctcaggcctgcctcggtgctacaaagctccacattgaggcatgcgtatcaggtgtccgc
tgccaggaagagcacgaggtgtgtgtcaccaacaggaactcagcagagccgactgaaccg
tcaaatacggtgaacgggatctgtccaatcatatcgtccgtggaggctggacttccttta
gaggcgggacttactgtagacgtgggacttcctgaagaggcgggacttccttacttgcta
gacgcccgtgtgcctatacctgttcccgacccgtatctctcaccgtcactaaacaggaag
gggatcaaccagtcagaatcccagttagcctcacctgtcctacctactgggctagagagt
ggaggaattacagagatacaacaacgacaacaacaacaaacacagcactccagttcacaa
ccccaggaaaaggatgccgttcaaacccagggcctaatccctgagctccaggaccagggg
ggctctagcccagagacacccagggacagtgagcactcacctggggagcatgagtgggat
gaggcctggctgagggaaggctccacctctgtagagctcaagcctggttttgctcatcct
cagtctgacactgaggggggcattgaggaatgcctaccctccaacccctactccctcccc
cacatagacaggtcgctttgctctgacagcttagggtcagacgactcagaacattcccag
ctgaagacctcagacagagagtacagaacaggatcaacccattccctgtctgtggaaaga
gaggaagagaaggaggaggagcgagaggaggaggaagatagtcatgtttacagtcagcag
gagcaggcagtagaaagcacgtcctgtccttattcagcacagtcaaacactgttatagca
gaactctctgactgtacagacactgttatagcagaactctctgaccgtacagacactgtt
atagcagaactctctgaccgtacagacactgttatagcagaactctctgaccgtacagac
actgttatagcagaactctctgaccgtacagacactgttatagcagaactctctgaccgt
acagacactgttatagcagaactctctgaccgtacagacactgttatagcagaactctct
gaccatagagatactgttatagcagaactctctgaccatacagacactgttacagcagaa
ctctctgaccatacagacactgttatagcagaactctctgaccgtacagacactgttaca
gcagaactctctgaccgtacagacactgttacagcagaactctctgaccgtacagacact
gttacagcagaactctctgaccgtacagacactgttacagcagaactctctgaccgtaca
gacactgttatagcagaactctctgactgtacagacactgttatagcagaactctctgac
cgtacagacactgttatagcagaactctctgaccgtacagtcactgttatagcagaactc
tctgaccgtacaaacactgttatagcagaactctctgactgtacagacactgttatagca
gaactctctgaccgtacagacactgttatagcagaactctctgaccgtacagtcactgtt
atagcagaactctctgaccgtacaaacactgttatagcagaactctctgactctgaccat
attgggctgccaagcacagaggagacagaggatgctatagtccccttcagccctacagga
gtcttcaaagagatcaccagtgatctgcttgttgacctcagctcacagggtgtgtctagt
gacataggccaggggtcaacccaacctacagagactgaatctcttcagggagacagcaca
gaaccctctgccttagatcaggaagccacgccgctgaggaggataaagattaccctggga
acagactctactgtgtgtaacgacgaggtccagagtcagctgaaggagctagacatccat
cacagcatttctgggcctgaactctctctctgcaccgtgccaccctccatcctgcctctg
tcctgcctctctgactccaacaacaacaccaaggccagcgaagggtcggtgttggggtct
ccctgtacaaggggtaaggggccagagcagtggccctccaaggtagaggtagccccccaa
agcagctcagaggagggtggagataaaacccatgatgagtccccttccctgacagagccc
tccacgtttacctctgacctcctgggggagacaccagacagccccctagaatacccccct
gaggactctgaggagttcctgtcctacctggcctacaagcactactggagcagtgaggac
tcagccgtgtccgggttgggggacgagtttcacttcagcttggctgaggtggaggagcta
gagaggctccagggagagggccacggagacgtcccttatcagaaccatacagacactgca
ggctgtaggagagatatatctaaccatacagacactacaggctgtaggagagatatctca
caccatacagacactacaggctgtaggagagatatatctaaccatacagacactacaggc
tgtgggagagatatatctaaccatacagacactacaggctgtgggagagatatatctaac
catacagacactacaggctgtgggagaaatatatctaaccatacagacactacaggctgt
gggagaaatatatctaaccatacagacactacaggctgtgggagagatatatctaaccat
acagacactacaggctgtgggagagatatatctaaccatacagacactacaggctatagg
agagatatatctaaacatacagacactacaggctataggagagatatatctaaacataca
gacactgcaggctgtggggaggttgtagagggggtagttcattctaattgtgctgctaac
agtccttcagacctttctgaacccttagcttcctacctggagacaagaggcctgctattg
gacagcgcagagaaagaggaggtgcagcagtccagcccccaccaatcccctaaccctccc
tcagagggagacagacaggactgtagcaaatcacctggggctttaggattagaggacagt
ttgtttgctgaggagtccagctcgtacagcacctacctccagaccagctctcaccctgcc
ctcctgcagcaggatcgtggggtgaggattgtgaggtacccctactccgacgtcagtctc
aacctgctctctctcagtagcctcgagcccatcctagagacagactccgaccgctccctg
gacaactctgggattgtggaggatgtgactggagtagaggaggagggggaggaggaggag
gaggaagaaggggaggaggaggagcaaagacagagttttaggatgaggcccactgagaaa
gacagggacagtgttgtcctgtctggtgacatcatcctgtcaaactccacctccggcctt
gagagcccgtcgttgtgtctccccgaggactcatccagtatcgagtcatcagagcaccaa
ctggacgcgttgacctttgaccccgatgacctcagggttatgaccttaccacacgacagg
gaccatgcaagcagcgagagacgctccagtccaacccccacctctgtgtcctacgacttt
gacaccaccagcactaacagtgaggagacggaagagtccatcctgcctgtctcggggggg
aacaccaacctccacaaacccatgaagagcaactctaaagacagccaggcaggaaggtcc
aagagctccaagttctctgtttttgccaagatgccttctttcaggaaggggaagagtctg
aagaatgccaaggaggaggacttgccccgggactcaccagacctgggcctgagcagggat
atggggggaggacaggtgggacaagggggagacacctcggatgatgacaatgttttcttg
aagggggacatcctgagccagacggttcagcagcccttctcctctggtctgggtggtcgc
tacgagacagagcaggaggattacagcttcttcccctccacaccgcgcacccgccatgtc
cgcctgctcttcagggatgggcctggggacacccccctgacctcccagcccggaggtctc
agacacaaccagcccgggccccccgagggcctgcacggctacaagaggagcaagagctct
gacagcctcaacctccgcatgcgcttcgcccaggcccacaagtccctgtccagcctgttt
gagtctcgctccatggacaaggagaacgaggaggagcaggtgaacattgagactgggaac
gaaggggaggtggggcgagccaaacagtcctggaggaggctaaagagagagagggccaag
gaggcagagctgctgaggaggaccctgtctgtcccggtcggggacggggtcaagggagag
gacggtgaggatgggggtgtgaggacgcccagacagacccacagtgactatgcgtcccgc
tctgcctcagtgctcagtgtccctgggtccccctcctctctcagggccctgtgtctcacc
gaccccctcactaagaggggcttccaggacagtcacagcgtggtcggggagaacacccca
ctgggctgcaagtcagagggccagaggaggaaagggaaagtcccacccaacggcctgtca
atcaacttctctgactccggaccgcactcctcggacgactctgaagccccacccacaaac
gactccagccccctgtcgcccatgagccccgcctccctggccaccctagccaatcagctg
tcttggtccagctccaggtccccaggaggagcctatgagagcacagcgtctagcatggca
gcaacaccagacaccccagtgagacccatgagccccaagccccacagccccagaccggct
gcccagcacaggcccttccgctacccccaatctgcctcagcccgggcctcagccctgtcc
ttgctcctcatggctcagtcagccagtgtagagggcttgtctgacccaccagagaagccc
aagaccctgaagcccagagcggggccgctaggctcctcctccctcagtccattggaggac
agtggagtggacagccaatcacagatcagcctgcttacacctatgtccatcaaccagttt
gagactcagggtggctgtagacccaccagccaggcaggaggagagaagaggctagcagag
cttaagtcccctgggtctggactggtcactactgcctcagccctcagaccaccaccaggc
cacaggccgaacagggagagggacaggggtccaagacgccaccgctgctcctcagatgac
ctgtggatcgaagaggagaagagacggaagcggaagctggcccgagtcgtgaggggcagc
ctgggacaactcaacacccactgtcctgaagatctggagaaagcacgggctcgagtgtcc
ctgtcgaccatggaggagttctccgggattcccctgaaggcccactgcttctcccagagc
acccccatcggacttgactgtctgggctggagacgacgcatctcctacccctcggtgata
gtaccagacggaggtggagagaaggccggtctgggtgatgatctaggcagtgatgaagac
ctgtatgaagagttccgcagctccggacatcgctgtggacacccagggggaggtggagaa
caactggccataaatgagctgatcagtgatggcagctgtgtgtacgccgaggccctgtgg
gaccatgtcaccatggacgaccaggagcttggcttcaaggcgggggacgtcatcgaggta
gtggatgccaccaacaaggagtggtggtggggacgcatcctggacagtgagggctggttc
ccagctagctttgttcggttgcgtgtgaaccaggatgagcccatggaggagtacctagct
cagctggaggaggctggggctggggaagtggaccggccaggggtgggtctgatcctggga
ccaggcctgccgtgtaaggaccagatgaggactaacgttatcaatgagatcatgagcaca
gagagagactacatcaaacacctcaaagacatctgtgagggttacatcaagcagtgccgt
aagaggatagacatgttcacagaggagcaactgcggtgtatattcggcaacatcgaagac
atctaccgcttccagaagaagttactgaaaggtctggagaagaggttcaacaaggagcag
ccgcacctcagcgagatcggatcctgcttcctcgaacaccaaacagacttccagatctac
tcggagtactgtaacaatcaccccaacgcctgtgtgcagttgtccagactgatgaagacc
aacaagtacgtgttcttcttcgaggcctgtcgtctgctgcagaagatgattgacatctcg
ctggatggcttcctgctcacgcccgttcagaagatctgcaagtaccctctgcagctggcc
gagctactgaaatacaccaaccctcagcatagggactataaggacgtggaggctgccttg
aacgccatgaagaatgtggccaggctgatcaacgagaggaagcggcgcctggagaacatc
gacaagatcgcccaatggcagagctccatagaggactgggagggagaagacatcctcagt
atgagttcggatctgatcttctctggagagctgacgaagatctcccagcctcaggctagg
agccagcagcgcatgttcttcctcttcgaccaccagatggtctactgcaaaaaggacctc
ctgcgcagggacatgctgtactataagggtcgtatggacatggacctgatggaggtggtg
gatgtggaggacgggaaggagaaggacttcaacgtgtcggtgaagaacgctctgaagctg
cgctcgctggcgggggacgaggtccacctgctgtgtgccaagaagcctgagcagaaacaa
cgctggctccgagccttccaggatgagaggacgcaggtgcagcacgacctcgaaacagga
ttctccatcactgaggtccagaagaaacaggccatgctgaacgcctgcaaaagccatcca
gctgggaagcccaaagcggtgacccggccctactatgacttcctgctgcgtcagaagcac
ccgtctctgcccagcaccgtaccccagcagcaggtcttcatgctggctgagcccaaacgc
aaggcgaccaccttttggcagaacatcggcagactgacgcctttcaagaagtga
DBGET
integrated database retrieval system
