Oncorhynchus tshawytscha (Chinook salmon): 112215584
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Entry
112215584 CDS
T05605
Name
(RefSeq) partitioning defective 3 homolog isoform X1
KO
K04237
partitioning defective protein 3
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04144
Endocytosis
otw04520
Adherens junction
otw04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
112215584
09144 Cellular community - eukaryotes
04520 Adherens junction
112215584
04530 Tight junction
112215584
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
otw01009
]
112215584
Protein phosphatases and associated proteins [BR:
otw01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
112215584
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Par3_HAL_N_term
PDZ
PDZ_6
Motif
Other DBs
NCBI-GeneID:
112215584
NCBI-ProteinID:
XP_042155027
LinkDB
All DBs
Position
LG16:30992442..31587444
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AA seq
1473 aa
AA seq
DB search
MKVTVCFGRTRVVVPCGNGTIKVHSLIEQAAMRYKKAIAKDPGYWLQVHRLEHGDGGILD
LDDTLCDVADDKDRLVAVYEEQDPHHGGDGTSASSTGTQSPDPFTAVAELNSSNMSAFQP
YQTSSEIEVTPSALRSNMPLHVRRSSDPSLVGLPLGDPHTAPEEPSRKNPTRWSTTAGFR
KHNHHHSHSHSQNTGTNSLERKDVDAYRSLPRDSAVWATQFQRETARSSLSANHPMVDRW
LDRQDQVLEKSRSSELSVQTPVIPAYLQEEEEEEERVKQEERNGRIEPVGRADSCVEHSP
TLSLNDMLKLVEVSNVGGPLGIHVVPFSATDRRTLGLLVKRLERGGKAEQEGLFQENDCV
VKINNGDLRNIRFEQAQNMFRQAMRSPVILFHVVPASMKSQYEQLSQEELSSPCPRGERG
NRGSFTSSHASDPQAPQPGERGSLVVHGGVGLDHNPQRMSSRSRPHPIPIPNIKHQNHGP
LPQRVPDQRFSTSLPHSGSNNVSSAPSPSLQRRVSANPTAGYLKKTGRRLNIQLKKGPEG
LGFSITSRDVPIGGSAPIYVKNILARGAAIQDGRLKAGDQLQEVNGVDLNGRSQEEVVAL
LRITPMGGTVSLLVLRQEDSYLPREVKSEEEDLVLTPDGTREFLTFEIPLSDSGSAGLGV
SVKGNRSKENHADLGIFVKSIINGGAACKDGRLRVNDQLIAVNGESLLGTPNQDAMEMLR
LSMSTEGNKRGMIQLIVARRVAKSNEEVPGSSRVEEQPLTDPLDDHERHISHSMFGTRES
MDDQPSMPPRNVMMVPRMMGNYQLSPTVNMPQDDTVMIEDDRPPVIPAHMSDQSSSSSHD
DMGFAADNPVTWAQDVPNQNECSLSPDTEDPEDSFQREGFGRQSMSEKRTKQFGDNANQL
EIIKTRKSKSMDLVSDEFNPHLTPSTENMEGSSTGETIGPSLGLKKSSSLESLQTAVAEV
TLNGEINLHRPRPRIIRGRGCNESFRAAIDKSYDRPGVIVTAMEECDLKGMETLEEDTEG
SSRSGRDSISTATDLTLPPGNSVTMETQVNGNGDKKRVKSVRDKKKPERDKEKEKEKEKE
KNKAKKGLLLKGLGDMFRFGKHRNGDKMERKGSSKSKMEDTQASEEEMLRMKLEQERIQA
KTREFRERQASVAREREYAEILDINPNLNCTFSSNEDEEHPYAGIGSLDGSSEDSRQEPH
QGPQPPQDSGPDQPDLEALYAQVNKPRNGHPPSADSNRLAPSNHDRIRRLRVEFQQARGE
EDPDDRRRTYSFEQPWANSETYTLTGHQSVSVESQVQRPRQDKRRDSFTQAQRQYSSLPR
QPRKTPSTVSQESCDKAFPPGEVFQTAKENPRYSSYQGSRNGYLHSGASGFNARVLLETQ
ELLRQEQRRREQSEAKMRLPPPQEGVPVTNTGYDDIHPAPTPTLPQDPVLTQAPIPVTAT
PKGPYRQDVPPSPSQLARLNRLQGSEKGHPFYS
NT seq
4422 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtgacagtgtgttttgggagaaccagggtggtggttccttgtggcaatggaact
attaaagtccacagtcttatcgagcaagccgccatgagatataaaaaggctattgcgaag
gatcctggctactggctacaggtgcacaggttggagcatggggacggaggcatactggat
ctggacgacacactgtgcgatgtggccgatgacaaagacaggctggtggcagtgtatgag
gagcaggaccctcaccatggaggcgatggcaccagtgccagctcaacgggcacacagagc
cctgaccccttcactgccgtcgcagagctcaactccagcaacatgtccgccttccagccc
taccagaccagcagcgagatagaggttaccccctccgccctgcgcagcaacatgcctctc
catgttcggcgcagtagcgacccctctctggtgggccttcccctgggtgacccacataca
gcaccggaggaaccatcccgtaagaaccccacacgatggtccaccacggcaggctttcgc
aagcacaaccaccaccacagccacagccacagccaaaacactgggaccaacagcctggaa
cgcaaggatgtagatgcgtaccggagtctccctcgtgattcagcagtttgggccacccag
ttccagagagagactgcccgctcctcactcagcgccaaccaccccatggtggaccgttgg
ctggacagacaggatcaggttttagaaaagagcagaagctctgaactatctgttcagacc
ccagtcatacctgcctacctacaggaggaggaggaggaagaggagagggtgaagcaggaa
gagaggaatgggagaatagagccggtggggagagcagactcctgtgtggaacactcccca
acgttatctctgaatgacatgctaaagctggtagaggtgtccaatgtcggcgggcctctg
gggatccacgttgtgcctttcagtgccacggacagaaggacccttgggttgttagtgaag
cgtctggagcgcggcggcaaggcggagcaggaaggtctgttccaggagaacgactgtgtc
gtcaagattaataacggggatctgaggaacatccgatttgaacaagcccagaacatgttc
aggcaggccatgcgttctcctgtcattctgttccatgtggtcccagcctccatgaagagc
cagtatgagcagctctcccaggaggagcttagctccccatgtccgaggggggagaggggt
aaccggggaagcttcacctccagccatgcctcggacccccaggccccgcagcccggggaa
aggggtagtctggtggtccacgggggggtggggttggaccacaacccacagaggatgtcc
tccaggtcaagaccacaccccattcccatccccaacatcaaacaccagaaccatggtcct
ctaccacagcgtgtaccagaccagcgcttctccacctcgctacctcacagcggaagcaac
aacgtctcctcggccccctctccatccctgcagaggagagttagtgccaaccctactgca
ggctacttaaagaaaactggccggagactgaacatccagctgaagaaaggtcctgagggt
cttggattcagcatcacatcacgtgacgtccccataggaggctccgcccccatctatgtc
aagaacatcctggctcggggtgctgctatccaagatggccgcctgaaggctggcgaccag
ctacaagaggtgaatggggtagacctgaatgggaggagtcaggaggaggtggtagctcta
ctcaggatcacccccatgggaggaacagtcagtctgctagtcctacgccaagaggactcc
tatctacctagagaagtgaagtcagaagaagaggacctggtgttgaccccagatggtacc
agggagttcctgacctttgagatccctctgagtgactcggggtcggcaggtctgggggtc
agcgtcaagggaaaccgctccaaggaaaaccacgccgacttgggcatctttgtcaagtcc
atcatcaacggaggggccgcctgcaaggatggccgactgagagtcaacgaccagctgatt
gccgtcaatggcgagtcgttgctagggacgcccaaccaggatgccatggaaatgcttcgc
ctgtccatgtcgacggagggcaacaaacgagggatgatccaactcatcgttgccaggagg
gttgccaagagcaacgaggaggttccaggaagctcgcgggtggaggagcagcctctgaca
gaccctctggacgaccatgagcgccacatctcccattccatgttcgggaccagagagtcc
atggacgaccagccctccatgccgccacgcaatgtcatgatggtaccgcgcatgatgggt
aactaccagctgtctccgactgtgaacatgccccaggacgacaccgtcatgatcgaagat
gataggccacctgtgatccccgcccacatgtctgaccaatcatcctccagctcccacgat
gacatgggctttgctgcagataacccagtgacttgggctcaggacgtgccaaaccaaaat
gagtgctccctcagtccggacacagaagacccagaagattcctttcagagggaggggttt
ggacgccagagcatgtcagagaaacgcaccaaacagtttggcgacaatgccaatcagctt
gagatcatcaagacgcgcaagtccaagagcatggacctagtatcagacgagtttaacccc
cacctcacccccagcacagaaaacatggaaggctcttcgacaggagaaacaattggtccc
tctctgggcctgaagaagtccagctccctggagagcctccagactgctgttgccgaggtt
acactcaacggggaaattaacctccacaggccacgcccacgaatcatcagggggcggggc
tgcaacgagagcttccgggcagccatcgacaaatcgtacgacaggccaggagtaatcgtt
actgctatggaagagtgtgacctgaagggaatggagacattggaggaggacaccgagggg
agttctcggtcaggccgggactccatatctacggccactgacctgaccctgccacccggc
aactctgtaaccatggagacacaggtgaatggcaacggcgataaaaagagggtgaagagc
gtgagggacaagaagaagcctgagagagataaagaaaaggagaaagaaaaagagaaagaa
aaaaacaaagccaagaaagggttgctgctgaagggcctgggagatatgttcaggtttggg
aagcaccgcaatggagacaagatggagcgtaaggggtcgagtaaatctaagatggaggac
acacaggcgtctgaggaggagatgctacggatgaaactggagcaggagaggatccaggcg
aagacgagggagttccgtgaacgtcaagcgtcggtggcgagggagagggagtacgctgag
atcctggacatcaaccccaacctgaactgcaccttcagctccaatgaagacgaggagcac
ccctacgcaggcatcggctccctggacgggtcatccgaagacagcagacaggagccccac
caagggccccagcccccccaggacagtggtccagaccagcccgacctggaagccctctat
gcccaggtcaacaagcctcgcaacggacaccctccctcagctgacagcaaccgactggcg
ccaagtaaccatgaccggatacggcgtctgagggttgagttccagcaggccagaggagag
gaggaccctgatgaccgacgacgcacatacagcttcgagcagccctgggctaactcggag
acctataccctgaccggacaccaatctgtttctgtggagtcacaggtgcagagaccgaga
caagacaagagacgagactcatttacacaggcccaaagacagtacagttccctgccacgg
caacctcgtaagacccccagcacagtgtcccaggagtcatgtgacaaagccttcccgccg
ggcgaggtcttccagacggccaaggagaacccccgctactccagctaccagggctccagg
aacggctacctgcacagcggggccagtggcttcaacgcccgcgtcctgctggagacccag
gagctgctgaggcaggagcagagacgcagggagcagtctgaggccaagatgaggctaccg
ccgccacaggagggggtccctgtcaccaacaccggctacgatgacattcacccagccccg
actccaacccttccccaggatccagtcctgacccaggccccgatccctgtcacagccaca
cccaagggcccgtaccgccaggatgtgcccccctctccatctcagctggccaggctcaac
aggctgcagggctcagagaaaggacatccattttactcctga
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integrated database retrieval system
