Oncorhynchus tshawytscha (Chinook salmon): 112215590
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Entry
112215590 CDS
T05605
Name
(RefSeq) integrin beta-1
KO
K05719
integrin beta 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03271
Virion - Rotavirus
otw04145
Phagosome
otw04510
Focal adhesion
otw04512
ECM-receptor interaction
otw04514
Cell adhesion molecules
otw04530
Tight junction
otw04810
Regulation of actin cytoskeleton
otw04820
Cytoskeleton in muscle cells
otw05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03271 Virion - Rotavirus
112215590
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
112215590
04514 Cell adhesion molecules
112215590
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
112215590
09144 Cellular community - eukaryotes
04510 Focal adhesion
112215590
04530 Tight junction
112215590
09142 Cell motility
04820 Cytoskeleton in muscle cells
112215590
04810 Regulation of actin cytoskeleton
112215590
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
112215590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112215590
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
otw04147
]
112215590
04515 Cell adhesion molecules [BR:
otw04515
]
112215590
04090 CD molecules [BR:
otw04090
]
112215590
Membrane trafficking [BR:
otw04131
]
Endocytosis
Phagocytosis
Integrins (complement receptors)
112215590
Exosome [BR:
otw04147
]
Exosomal proteins
Proteins found in most exosomes
112215590
Cell adhesion molecules [BR:
otw04515
]
Integrins
Integrin beta subunits
112215590
CD molecules [BR:
otw04090
]
Proteins
112215590
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Integrin_beta
Integrin_B_tail
Integrin_b_cyt
EGF_integrin
PSI_integrin
I-EGF_1
EGF_2
EGF_Teneurin
Motif
Other DBs
NCBI-GeneID:
112215590
NCBI-ProteinID:
XP_042155032
UniProt:
A0AAZ3PC14
LinkDB
All DBs
Position
LG16:31953857..32006937
Genome browser
AA seq
797 aa
AA seq
DB search
MDLKLLLISTLLGVICYSSAQQEGNECIKANAKSCGECIQVGAKCGWCMDPGFLKQGEAT
STRCDELESLRKRGCSSTKVENPRGSQRALKNKAVTNRNKGEGKLRPEDITQVQPQKLTL
SLRSGEPQSFNLKFKRAEDYPIDLYYLMDLSYSMKDDLENVKNLGTHLMLEMSKITTDFK
IGFGSFVEKTVMPYISTTPAKLLNPCTGDQNCTSPFSYKNVLKLTSNGQEFNTLVGQQHI
SGNLDSPEGGFDAIMQVAVCGEHIGWRNVTRLLVFSTDAGFHFAGDGKLGGIVLPNDGKC
HLENNMYTMSHYYDYPSIAHLVQKLSDNNIQTIFAITEEFQPVYKELKNLIPKSAVGILS
ANSSNVINLIIDAYNSLSSEVILENSKLPEGVTIMYQSRCKNGVTGEGEMGRKCSNISIG
DEVSFTIRITAKQCPKMGKPETIKIKPLGFNEEVEITLNFICECDCHKDGIENSDICHNG
NGTYECGACRCNEGRIGRQCECSTNEVTSEDLDKSCRKDNGTDICSNNGDCVCGTCECKK
RENPEERYSGMFCECDNFNCDRSNNKLCGGHGHCECRVCICDANWTGSACDCSLDTTTCL
ASNKQICNGRGTCECGTCKCTDPKFQGPSCEICPTCPGVCTEHKECVQCRAFGTGEKKDT
CERDCSYFNLIKVKDRDKLPQPGQAFPLMHCKERDANDCWFYYTYAVNKTEKEVHVVETL
DCPAGPDIIPIVAGVVAGIVLIGLALLLIWKLLMIIHDRREFAKFEKEKMNAKWDTGENP
IYKSAVTTVVNPKYEGK
NT seq
2394 nt
NT seq
+upstream
nt +downstream
nt
atggacctgaaactacttctgatttcaacgttgttaggagtcatttgttacagcagtgct
cagcaagaagggaacgagtgcatcaaggctaatgccaaatcctgtggggagtgtattcaa
gtgggagcgaaatgtggctggtgcatggacccagggttcctgaagcagggtgaggccaca
tcgacccgctgtgacgagctggagtccctgaggaagagaggttgtagctccaccaaggta
gagaacccccgaggcagccaacgggccctgaagaacaaggctgtgaccaaccgcaacaag
ggagaaggaaaactccgaccagaggacatcacacaggtccagccacagaaactcaccctc
agcctcagatctggtgaaccccagtcttttaacctgaagttcaaacgggccgaggattac
cccattgacctctactacctgatggacctgtcctactccatgaaggacgatctggaaaac
gtcaagaacctgggaacacatctgatgctggagatgtcaaagatcacgactgattttaaa
atcggttttggttcctttgtagaaaagacagtgatgccttacattagcaccacgccagcc
aagctgctgaacccctgtactggggaccagaactgcacaagtcccttcagctacaagaac
gtcctgaagctgaccagcaatggacaggagttcaataccctggtgggacaacagcatatc
tctggaaacctggactcaccagagggaggcttcgatgccatcatgcaagtggctgtgtgt
ggtgagcacattggctggaggaacgtcacccgtctgctggtgttctccactgacgctggc
ttccactttgctggagatgggaaactgggagggatagttttgcccaacgatgggaaatgt
cacctggagaacaacatgtacacaatgagccactactatgactacccctccatcgctcac
ctggttcagaaacttagcgacaacaacatccagacgatctttgccatcacagaggagttc
cagcctgtttacaaggagttaaagaatctcattcctaaatctgcagtggggatactctct
gctaactccagcaacgttatcaacctcattattgatgcctacaattctctttcctcagag
gtgattctggagaacagcaagctaccagagggagtgaccataatgtatcagtcacgctgc
aagaacggagtgactggtgagggagagatgggaagaaaatgctccaatatctcaatcggt
gacgaggtgtctttcaccatacgcatcacagctaagcagtgtcctaaaatgggcaaacca
gagaccatcaagatcaaacccctagggttcaatgaggaggtggagatcactctgaacttc
atctgcgagtgtgactgtcacaaagatggcattgagaacagtgacatctgccacaacggc
aacgggacatatgaatgtggagcctgcaggtgcaatgagggccgtattggtagacagtgt
gagtgcagcaccaacgaggtgaccagcgaagacctggataagagctgccgtaaagacaac
ggtacagacatctgcagcaacaacggagactgtgtgtgtggaacctgtgagtgcaagaag
agagagaacccagaggagcgctacagcgggatgttctgcgagtgtgacaacttcaactgt
gaccgctccaacaacaaactctgtggaggacatggtcactgtgagtgcagggtgtgtata
tgtgatgccaactggacaggcagtgcctgtgactgttctctggacaccacgacctgcctg
gcttcaaacaagcagatctgtaacggacgaggcacctgtgagtgtggcacctgcaagtgt
actgacccaaagttccaaggccccagctgtgagatctgtcctacctgtccaggggtctgc
acagaacacaaggagtgtgttcagtgcagggcctttgggacgggggagaagaaggacacg
tgtgagagagactgtagctacttcaacctgatcaaggtgaaggacagggacaagctgcct
cagccaggacaggccttccccctgatgcactgtaaggagagggatgccaacgactgctgg
ttctactacacctacgctgtcaacaagacagagaaggaggtccatgtggtggaaacacta
gactgccctgcgggccctgacatcatccccatcgtggctggcgtggtggcgggcatcgtc
ctgatcggcctggctttgcttctcatctggaagctgctcatgatcatccacgacaggaga
gagttcgccaagtttgagaaggagaagatgaatgctaaatgggacacgggcgaaaaccct
atctacaagagtgctgttacgacagtggtcaaccccaaatatgaaggcaaatga
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integrated database retrieval system
