Oncorhynchus tshawytscha (Chinook salmon): 112215675
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Entry
112215675 CDS
T05605
Name
(RefSeq) transcription factor Sox-17-alpha-A
KO
K04495
transcription factor SOX17 (SOX group F)
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
112215675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112215675
Transcription factors [BR:
otw03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
112215675
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box
Sox17_18_mid
HMG_box_2
HMG_WDHD1
HTH_24
Motif
Other DBs
NCBI-GeneID:
112215675
NCBI-ProteinID:
XP_024230680
LinkDB
All DBs
Position
LG16:41263776..41266104
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AA seq
390 aa
AA seq
DB search
MSSPDAGYASDDQTQTRCAMSVMMPGMGHCQWADPLSPLGDTKVKSESCATSSGNQNRGK
TEPRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALPVSEKRPFVEEAER
LRVQHMQDHPNYKYRPRRRKQVKRIKRLDSGFLVHSVSDHQSTSRVCMEGLGLGYHHEHG
YQVSTQSLGHYRDAQALGGASYEPYSLPTPDTSPLDAVESDSMFFPGHSQEECHMMPAYA
YHSQGAEYTPQDPHSNQHANHMLHRHLSSPTEQQQGHQAGPMPPSFNQLAMYYSQHCSPS
HPKRHPGHGTGQRSPPPDSHPADPVEQMHPSELIGEVDRSEFEQYLNSSRPGDMTGLSYG
AHEANMQGPESLISSVLSDASTVFYCNYTS
NT seq
1173 nt
NT seq
+upstream
nt +downstream
nt
atgagtagtccggatgcgggttacgccagtgacgatcagacccagactaggtgcgcgatg
tcagtcatgatgcctggaatgggacactgtcagtgggcagaccccctgagccctctcggg
gacaccaaagtgaagagcgagtcgtgcgctaccagctccgggaaccagaaccgtggaaag
actgagccgcggatccggcgacccatgaatgcgttcatggtgtgggcaaaggatgagcgc
aagcgcctggcacaacaaaatccggacctgcacaatgcggagttgagcaaaatgttgggg
aagtcgtggaaagcccttcctgtgtccgaaaagcgcccctttgtagaggaggctgaaagg
ctccgggtccagcacatgcaggaccaccctaactacaaataccgaccccggaggaggaag
caggtgaagaggattaagcgtctggactcagggttcctggttcatagtgtgtccgaccac
cagagcacctcccgagtgtgtatggagggcctggggctgggttaccaccacgagcatggc
taccaggtgtcgactcagtccctcggccactaccgcgacgcccaggccctcgggggggct
tcctacgaaccctacagcctgcccacccccgacacctccccactggatgccgtggaatca
gactccatgttcttccccggccactctcaggaggagtgccacatgatgcctgcgtacgcc
taccactcccagggggcagagtacacgcctcaggaccctcactccaaccagcacgccaac
cacatgctccacagacacctctcctcccccactgagcagcagcaaggccaccaggctggc
cccatgcccccctccttcaaccaattggctatgtactacagccagcattgtagccccagt
caccccaagcgacacccaggacatgggacaggacagcgctcccctcccccagactcccac
ccagcggacccggtggagcagatgcatccatcagagctgataggtgaggtggaccggagt
gagtttgaacagtacctgaactcctccagacctggggacatgacaggcctgtcttatggg
gcacatgaggccaacatgcagggacctgagagcctgatatcctctgtgctctctgatgcc
agcacagtgttctactgtaactacacctcctaa
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