Oncorhynchus tshawytscha (Chinook salmon): 112215679
Help
Entry
112215679 CDS
T05605
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04140
Autophagy - animal
otw04148
Efferocytosis
otw05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
112215679
04148 Efferocytosis
112215679
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
112215679
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112215679
Membrane trafficking [BR:
otw04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
112215679
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Vps39_2
TPR_7
Vps39_1
Helicase_PWI
zf-C3H2C3
zf-rbx1
zf-RING_11
Motif
Other DBs
NCBI-GeneID:
112215679
NCBI-ProteinID:
XP_024230683
LinkDB
All DBs
Position
LG16:complement(41325912..41356047)
Genome browser
AA seq
853 aa
AA seq
DB search
MAEVEKGRKPSEESTDDSEEEDSEEEPKLKYERLANGVTEILQKDAASCMTVHDKFLALG
THFGKVFLLDIQGNLTQKFEISPVKINQISLDESGEHMGICSEDGKVQVFGLYTREGFHE
NFDCPVKVVALHPRFSSSNYKQFVTGGNKLLLYEKNWLNRWKTSTLHEGEGTITNVQWRA
NLIAWANNMGVKIYDISTKQRITNVLRDNVSLRPDMYPCSLCWKDNSTLIIGWGSSIKIC
VVKERGHTELRDLPSRYVEIVSAFETEFFISGLAPLADQLVTLYFVKENSDHMEEEFRAR
PCLDIIQPLPEGYEEISSDALTVRNFQENECRDYRLEHSEGESLYYIISPKDIVVAKERD
QDDHIDWLLDKKKYEEALMAAEISFKNIKRHEVQKIGMAYINHLVEKGDYDTAARKCQKV
LGKNMELWENEVYRFKTIGQLKAISQYLPRGDLRLRPAIYEMILHEFLKSDYEGFATLIR
EWPGELYNNMTIVQAVTDHLKKDPMNSTLLTTLAELYTYDQRYDRALEIYLRLRHKDVYQ
LIHKHDLFSSIEDKIVLLMDFDKEKAVDMLLDNEDKILIDRVVEELRDRPELLHIYLHKL
FKRDHHKGQRYHERQIGLYAEYDRPNLLPFLRDSIHCPLEKALEICQERNFVEETVFLLS
RMGNCRRALQMIMEELEDVDKAIEFAKEQDDAELWEDLISYSIDKPPFITGLLNNIGTHV
DPILLIHRIKEGMEIPNLRDSLVKILQDYNLQILLREGCKKILVADSLSLLQKMHRTQMR
GVRVDEENICESCHASILPSDMAQNFSVVVFHCRHMFHKECLPSPGTIPGVQFCNICSAK
RRGPGSGILEMKK
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atggcagaagtagagaagggaagaaaaccaagtgaagaatccacagatgactctgaggaa
gaggacagcgaggaggagcctaagctgaagtatgagcgactggccaatggggtgactgag
attctccaaaaggatgctgccagctgtatgactgtccatgataagttccttgcactgggc
actcactttgggaaggttttccttctggacatccaaggaaatctgactcagaagtttgaa
attagtccagtgaagatcaaccagatcagtctggatgagagtggagagcatatggggatc
tgctctgaggacggcaaggttcaagtgtttggactctacacgagggagggcttccatgag
aactttgactgtcctgtcaaagtggtggcgttacaccctcggttcagcagttcaaactac
aaacaatttgtcaccggaggcaacaagctgctgctgtacgagaagaactggctgaaccgc
tggaagacgtccactctgcacgagggggagggcaccatcactaacgtccaatggagggcc
aatctcatcgcctgggccaacaatatgggggtgaagatttatgacatcagcaccaaacag
cgaatcaccaacgtcctgcgggataacgtcagcctgcgacctgatatgtacccctgcagt
ctgtgctggaaagacaactccaccctcatcatcggttggggctcctctattaagatctgt
gttgtgaaggagaggggccacacagagttgagagaccttcctagccgttatgtggaaatt
gtgtctgcgtttgaaactgagttcttcatcagtggcctggcgcctctagcagaccagctg
gtcaccctgtactttgtgaaggagaactctgatcacatggaggaggagttccgagcgcgg
ccttgtctggacatcatccagcctcttccagagggctatgaggaaatctcatcagacgcc
ctgaccgtccgcaacttccaggagaacgagtgtcgagactaccgactggaacattccgag
ggagaatccctctactacatcatcagccctaaagacattgtggtggccaaagagagagac
caagatgaccacattgactggctgctggacaagaagaagtatgaggaagctctgatggct
gccgagatcagcttcaagaacattaaacgccatgaagtccagaaaattgggatggcctac
atcaatcacctggtggagaaaggtgactatgacaccgctgccaggaagtgtcagaaggtg
ctggggaaaaacatggaactctgggagaatgaggtgtacaggtttaaaaccattgggcag
ttgaaggccatcagtcagtacttgcctagaggggacctgcgtctcagacctgccatctat
gagatgatcttacacgagtttctaaagtcagactatgagggctttgccaccttgatccgt
gagtggccaggagagctctacaataacatgaccattgttcaggcagtcaccgaccacctc
aagaaggaccccatgaacagcaccctgctcaccacactggctgaactgtatacatatgac
cagcggtatgaccgagccctggagatctaccttagactgaggcataaagatgtttaccag
ctgatccacaaacacgacctcttctcctccatagaagacaagattgtgctcctcatggac
tttgataaagagaaagctgtcgacatgctcctggataacgaagacaaaatattgattgac
agagtggtggaggaactcagggacaggcctgagctgctacacatttatctccacaaacta
ttcaagagggaccaccacaagggtcagcggtaccatgagagacaaattggcctgtatgct
gaatacgatcggcccaacctactgccattcctgagagacagcatccactgcccactagaa
aaggctctggaaatttgtcaggagagaaactttgtggaggaaactgtcttcctgctcagc
agaatggggaactgtagacgggctcttcagatgatcatggaggaactggaggatgtggac
aaggccatagagttcgccaaggagcaggatgacgctgagctgtgggaggatctcatctcg
tattccatcgataagccacccttcattactggtctcctcaataacattgggacacatgtg
gatcccattttactcatccaccgcataaaggagggcatggagattcctaacctcagagac
tcactggtcaagatcctccaagactacaacctgcagatcttgctccgggagggttgtaag
aagatcttggtggctgactcgctgtcactgctccagaagatgcataggactcagatgaga
ggggtcagagtggatgaagagaacatctgtgaatcctgtcacgcttcaatattaccatca
gatatggcccagaacttcagtgtggtggtcttccactgcagacacatgttccacaaggag
tgtttaccttctcctggaacgattcctggtgtccagttttgcaacatctgcagtgcgaag
cggagagggccaggaagtggaatactggagatgaagaagtaa
DBGET
integrated database retrieval system
