Oncorhynchus tshawytscha (Chinook salmon): 112215679
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Entry
112215679 CDS
T05605
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04140
Autophagy - animal
otw04142
Lysosome
otw04148
Efferocytosis
otw05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
112215679
04140 Autophagy - animal
112215679
04148 Efferocytosis
112215679
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
112215679
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112215679
Membrane trafficking [BR:
otw04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
112215679
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_Vps41
Beta-prop_Vps41
zf-RING_Vps41
Clathrin
zf_RING_Vps8_fungal
WD40_CDC20-Fz
VPS18_solenoid_2nd
WD40_Prp19
Beta-prop_HPS5
Vps39_1
TPR_7
Beta-prop_EML_2
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
zf_RING_Vps8
WD40_WDHD1_1st
Beta-prop_THOC3
TPR_YpiA
TPR_GEMI5
Beta-prop_WDR3_1st
TPR_PEP5_VPS11
Helicase_PWI
zf-C3H2C3
CFAP251_N
Beta-prop_IFT140_2nd
zf-rbx1
zf-Vps39_C
VPS18_RING_C
Motif
Other DBs
NCBI-GeneID:
112215679
NCBI-ProteinID:
XP_024230683
LinkDB
All DBs
Position
LG16:complement(41325912..41356047)
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AA seq
853 aa
AA seq
DB search
MAEVEKGRKPSEESTDDSEEEDSEEEPKLKYERLANGVTEILQKDAASCMTVHDKFLALG
THFGKVFLLDIQGNLTQKFEISPVKINQISLDESGEHMGICSEDGKVQVFGLYTREGFHE
NFDCPVKVVALHPRFSSSNYKQFVTGGNKLLLYEKNWLNRWKTSTLHEGEGTITNVQWRA
NLIAWANNMGVKIYDISTKQRITNVLRDNVSLRPDMYPCSLCWKDNSTLIIGWGSSIKIC
VVKERGHTELRDLPSRYVEIVSAFETEFFISGLAPLADQLVTLYFVKENSDHMEEEFRAR
PCLDIIQPLPEGYEEISSDALTVRNFQENECRDYRLEHSEGESLYYIISPKDIVVAKERD
QDDHIDWLLDKKKYEEALMAAEISFKNIKRHEVQKIGMAYINHLVEKGDYDTAARKCQKV
LGKNMELWENEVYRFKTIGQLKAISQYLPRGDLRLRPAIYEMILHEFLKSDYEGFATLIR
EWPGELYNNMTIVQAVTDHLKKDPMNSTLLTTLAELYTYDQRYDRALEIYLRLRHKDVYQ
LIHKHDLFSSIEDKIVLLMDFDKEKAVDMLLDNEDKILIDRVVEELRDRPELLHIYLHKL
FKRDHHKGQRYHERQIGLYAEYDRPNLLPFLRDSIHCPLEKALEICQERNFVEETVFLLS
RMGNCRRALQMIMEELEDVDKAIEFAKEQDDAELWEDLISYSIDKPPFITGLLNNIGTHV
DPILLIHRIKEGMEIPNLRDSLVKILQDYNLQILLREGCKKILVADSLSLLQKMHRTQMR
GVRVDEENICESCHASILPSDMAQNFSVVVFHCRHMFHKECLPSPGTIPGVQFCNICSAK
RRGPGSGILEMKK
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atggcagaagtagagaagggaagaaaaccaagtgaagaatccacagatgactctgaggaa
gaggacagcgaggaggagcctaagctgaagtatgagcgactggccaatggggtgactgag
attctccaaaaggatgctgccagctgtatgactgtccatgataagttccttgcactgggc
actcactttgggaaggttttccttctggacatccaaggaaatctgactcagaagtttgaa
attagtccagtgaagatcaaccagatcagtctggatgagagtggagagcatatggggatc
tgctctgaggacggcaaggttcaagtgtttggactctacacgagggagggcttccatgag
aactttgactgtcctgtcaaagtggtggcgttacaccctcggttcagcagttcaaactac
aaacaatttgtcaccggaggcaacaagctgctgctgtacgagaagaactggctgaaccgc
tggaagacgtccactctgcacgagggggagggcaccatcactaacgtccaatggagggcc
aatctcatcgcctgggccaacaatatgggggtgaagatttatgacatcagcaccaaacag
cgaatcaccaacgtcctgcgggataacgtcagcctgcgacctgatatgtacccctgcagt
ctgtgctggaaagacaactccaccctcatcatcggttggggctcctctattaagatctgt
gttgtgaaggagaggggccacacagagttgagagaccttcctagccgttatgtggaaatt
gtgtctgcgtttgaaactgagttcttcatcagtggcctggcgcctctagcagaccagctg
gtcaccctgtactttgtgaaggagaactctgatcacatggaggaggagttccgagcgcgg
ccttgtctggacatcatccagcctcttccagagggctatgaggaaatctcatcagacgcc
ctgaccgtccgcaacttccaggagaacgagtgtcgagactaccgactggaacattccgag
ggagaatccctctactacatcatcagccctaaagacattgtggtggccaaagagagagac
caagatgaccacattgactggctgctggacaagaagaagtatgaggaagctctgatggct
gccgagatcagcttcaagaacattaaacgccatgaagtccagaaaattgggatggcctac
atcaatcacctggtggagaaaggtgactatgacaccgctgccaggaagtgtcagaaggtg
ctggggaaaaacatggaactctgggagaatgaggtgtacaggtttaaaaccattgggcag
ttgaaggccatcagtcagtacttgcctagaggggacctgcgtctcagacctgccatctat
gagatgatcttacacgagtttctaaagtcagactatgagggctttgccaccttgatccgt
gagtggccaggagagctctacaataacatgaccattgttcaggcagtcaccgaccacctc
aagaaggaccccatgaacagcaccctgctcaccacactggctgaactgtatacatatgac
cagcggtatgaccgagccctggagatctaccttagactgaggcataaagatgtttaccag
ctgatccacaaacacgacctcttctcctccatagaagacaagattgtgctcctcatggac
tttgataaagagaaagctgtcgacatgctcctggataacgaagacaaaatattgattgac
agagtggtggaggaactcagggacaggcctgagctgctacacatttatctccacaaacta
ttcaagagggaccaccacaagggtcagcggtaccatgagagacaaattggcctgtatgct
gaatacgatcggcccaacctactgccattcctgagagacagcatccactgcccactagaa
aaggctctggaaatttgtcaggagagaaactttgtggaggaaactgtcttcctgctcagc
agaatggggaactgtagacgggctcttcagatgatcatggaggaactggaggatgtggac
aaggccatagagttcgccaaggagcaggatgacgctgagctgtgggaggatctcatctcg
tattccatcgataagccacccttcattactggtctcctcaataacattgggacacatgtg
gatcccattttactcatccaccgcataaaggagggcatggagattcctaacctcagagac
tcactggtcaagatcctccaagactacaacctgcagatcttgctccgggagggttgtaag
aagatcttggtggctgactcgctgtcactgctccagaagatgcataggactcagatgaga
ggggtcagagtggatgaagagaacatctgtgaatcctgtcacgcttcaatattaccatca
gatatggcccagaacttcagtgtggtggtcttccactgcagacacatgttccacaaggag
tgtttaccttctcctggaacgattcctggtgtccagttttgcaacatctgcagtgcgaag
cggagagggccaggaagtggaatactggagatgaagaagtaa
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integrated database retrieval system
