Oncorhynchus tshawytscha (Chinook salmon): 112215694
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Entry
112215694 CDS
T05605
Name
(RefSeq) protein scribble homolog isoform X1
KO
K16175
protein scribble
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
112215694
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Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
LRR_8
PDZ_6
LRR_4
PDZ_2
LRR_9
Motif
Other DBs
NCBI-GeneID:
112215694
NCBI-ProteinID:
XP_042155109
LinkDB
All DBs
Position
LG16:42451203..42589910
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AA seq
1464 aa
AA seq
DB search
MLKCIPLWRCNRHVESVDKRHCNLQNVPDEIFRYSRSLEELLLDANQLRELPKPFFRLLN
LRKLGLSDNEIQRLPPEVANFMQLVELDISRNDIPEIPESIKFCKALEIADFSGNPLSKL
PDGFTQLRGLAHLALNDVSLQTLPNDIGNLANLVTLELRENLLKSLPTSLSFLVKLEHLD
LGSNELDLLPDTLGALPNLRELWLDRNQLSSLPLELGNLQRLVCLDVSENRLEELPSELS
GLLALTDLLLSHNLLEVVPDSIGSLKQLSILKVDQNRLTHLSDSIGECENLTELVLTENL
LQTLPRSLGKLKKLTNLNVDRNRLGDVPDELGGCASLNVLSLRDNRVAKLPAELADATEL
HVLDVAGNRLQNLPFALANLNLKAMWLAENQSQPMLKFQTEDDESTGEKVLTCYLLPQQP
SPSLENLLQNSVDDSWIDSNLNRVSVIQFQEETTKQDEDDEAAAERRGLQRRATPHPSEL
KVMKKVIEEKRNEAYISCPDGEPESPGTEEKRLSNLSNQSHDSAASNSTASANSHEERRC
VITTARESLVGGRVEQEEEELDEMEVEYVEPTVHFAEEPIYQGGNEYCEDEEGGDGVPCS
DLEEQRPQFPTEKQRLIRKDTPHYKKHFKITKLPKPEAVAALLQGFSPDAHLAQHPTSHH
PDPEKEEEEEEECMVTPQRHNRIEEPKQEERSLLHVNSSLQSVKGVSFDQVNNLLIEPAR
IEEEEHTLTILRQTGGLGISIAGGQGSTPYKGDDEGIFISRVSEEGPAAQAGVKVGDKLL
EVNGVVLQGAEHHTAVEALRSSGAAVSMSVLREHMVEPENAITTTPLRPEDDYFPRERRA
SGLPFCIEAGSPAGFRHRLSACLVRNDKGLGFSIAGGKGSTAYRTGDMGIYISRIAEGGA
AHRDCTLRVGDRVITINGVDMTEARHDQAVALLTGTSPTIALLVERDQAEPGTPGGSPGL
SRARAHSPPPPEPSDSPDQEEGNDDSSLLPHGNHLSQPLEDEYPIEEVALVKAGGPLGLS
IVGGSDHASHPFGINEPGVFISKVIPHGLACQSGLRVGDRILEVNTIDLRHATHQEAVKA
LLSNKQEIRMLVRRDPSPPGMEEIVIQKQPGEKLGISIRGGAKGHAGNPFDATDEGIFIS
KVSSSGAAARDGRLLVGMRILEVSNHSLLGMTHTEAVRVLRAVGDTLVMLVCDGFDPGNA
ASVEASPGIIANPFAAGIVRKNSMESISSIDRDLSPEEMDILQKEVEMVRETSQWEREEM
EKVERMRLEREEDTRLLEEETENLGTGPLKLDYRTLAALPTTALQKVNRLSPSVSATLPM
EAPIQAQCSFTLEPLGFDLGQHPTSLFPLPHALPQSGPIMNTEAGPLYMSQHSPSPLITA
SNQGAARQEALPTGEDEEVVVLVDSQPINFTENPFLVANRRGKGCPPSERILSGPPVGYG
SAGKLQPWLFSKASSLPACLRVWV
NT seq
4395 nt
NT seq
+upstream
nt +downstream
nt
atgctgaagtgtatccctttgtggcgttgtaaccgccacgtcgagtcggtggacaagcga
cattgtaatttgcaaaatgtccccgatgagatatttcgctacagccgcagtctggaggag
cttctcctcgacgctaaccaactccgagaactacccaagcctttcttcagacttctgaac
ctgcggaaactgggtctgagtgacaatgagatccagaggctccctcctgaggtggccaac
ttcatgcagctggtggagctcgacatctccagaaacgacattcctgagatccccgagagc
attaagttctgcaaggcattggagattgcagacttcagtggaaaccccctctccaagttg
cctgatggtttcactcagctcagagggctcgcccacctggcacttaacgatgtttcattg
cagacactgcccaacgacataggaaacctggccaacctggtgacgctggagctcagggag
aacctgctcaagtccctgcccacgtcactctctttcctggtgaaactggagcatctggac
ctgggcagcaatgaactggatttgttgccggacacacttggtgctctccctaacctacgg
gagctgtggttggaccgcaaccagctctcctctttgccactagagctggggaacctgcag
agactcgtgtgtctagatgtgtcagagaaccgactggaggagttgccctcagagctcagc
ggcctgctggccctcactgacctgctgctctcacacaacctcctggaggtggtccccgac
agcataggctctctgaagcagctgtccatcctgaaagtggaccagaaccgactgacccac
ctgagtgactccataggagagtgtgagaacctgacggaactcgtactgaccgagaacctc
ttacagactctgcctcgctcgctgggcaagttgaagaagctgaccaacttgaatgtggac
cgcaaccggctgggcgacgtgcctgatgagctgggtggttgcgccagcctcaacgtgctc
tccctcagagacaatcgcgtggccaaattgcccgctgagctggctgacgccactgagctt
catgttctggatgtggcagggaacaggttacagaacctgccatttgccctggccaacctc
aacctgaaggccatgtggctggcagagaaccagtcccagcccatgctcaagttccagacg
gaggacgacgagagcaccggggagaaggtgctcacctgctacctgttgccccagcagccc
tcccccagcctggagaacctgctgcagaacagtgtggacgacagctggatagacagcaac
ctgaaccgggtatccgttatccagttccaggaggagaccaccaagcaggatgaggacgat
gaggcggctgcagagcgcaggggtctccagcgccgggcgacgccccaccccagtgagctg
aaggtcatgaagaaggtgattgaggagaagaggaatgaggcctacatatcctgtcctgat
ggagagccagagtctcctggtactgaggagaaacgactgagcaatctgtccaatcagagc
cacgactctgcggcgtccaacagtacagcctctgccaactctcacgaggagagacggtgc
gtgattaccacagcgagggagagcctagtgggtgggcgtgtggaacaggaggaggaggag
ctagacgagatggaggtggagtatgtggagcccacggtgcactttgcagaggagcccata
taccagggtgggaatgagtactgtgaggacgaggagggtggggacggggtcccatgcagc
gacctagaggaacagaggccccagttccctacggagaagcagcgtctgatcaggaaggac
acgccgcactacaagaagcacttcaagattaccaagctgccaaaacccgaggcggtggcc
gcgttactgcagggcttcagccccgacgcacacctggcccaacaccccacctcgcaccac
cctgaccccgagaaggaggaagaggaagaggaggagtgtatggttactccacagcgccac
aacagaatagaagagccaaagcaggaggagaggagtctgcttcatgtcaactcttccctg
cagtcggtcaagggggtgtcatttgatcaagtcaataatctcctgattgagcctgctcga
attgaggaggaagagcacaccctgaccattttacgtcaaactgggggcctgggcatcagc
atagccggaggacagggatccacaccctacaagggggatgatgagggaattttcatctcc
agggtgtctgaagagggccctgcagcgcaggctggggtcaaagtgggagacaaactccta
gaggtgaacggtgtggttctccagggggcagagcaccacacggcggtagaggcgctgcgc
agctcgggcgccgccgtctccatgagcgtcctccgggagcacatggtggagccggagaac
gccatcaccaccacaccgctaaggcccgaggacgactacttcccccgggagagacgggcc
agtggccttcccttctgcattgaggcaggctcccccgcaggcttccgacacaggctgtct
gcctgcctggtccgcaatgacaagggtctgggcttcagcattgccgggggcaaaggctcc
acagcctaccgcacgggggacatggggatctacatctcgcggatcgcagagggaggggcg
gcccacagagactgcacactccgagtaggggacagggtcatcaccatcaatggcgtagac
atgaccgaggccaggcatgaccaggcagtagcgctgcttaccggcacctctcccaccatt
gctctcctggtggagcgtgaccaggctgagccgggcaccccagggggctccccgggcctg
tcccgtgcccgcgcccactcccccccacctccagagccctctgactcacccgaccaggaa
gagggcaacgacgactcgagcctcttgccccatgggaaccacctgagccagccgctggag
gacgaataccccatcgaggaagtggcgttggtgaaagcgggcggccccctgggactgagc
atcgtgggaggcagtgatcacgccagtcacccgttcggcatcaacgagcctggcgtcttc
atctctaaggtgatcccccatggcttggcgtgtcagagtgggctgcgggtgggggacagg
atactggaggtgaacaccatcgacctgcgccacgccacccaccaggaggctgttaaagcc
ctgctctccaacaagcaggagatccgcatgctggtgcgcagggacccctcgcctcccggg
atggaggagatagtgatccagaagcagcctggagaaaagctgggcatcagcatccgcggc
ggtgccaagggccacgctggcaaccccttcgacgccaccgatgagggcattttcatatcc
aaggtgagctccagcggtgcggcggccagggatggccgtctgcttgtgggcatgcggatc
ttggaggtgagtaaccacagcctgctgggcatgacccacacggaggctgtacgcgtgctc
cgcgccgtgggagacaccctggtcatgctggtgtgtgacggcttcgaccctggcaacgct
gcctctgtagaggcgtcaccgggcatcattgccaacccgtttgccgcaggcatcgtgcgt
aagaacagcatggagagcatctcctctatagaccgagacctgagtcccgaggagatggac
atcctacagaaggaggtggagatggtgcgagagacatcccagtgggagagagaagagatg
gagaaggtggagcgcatgcgcttggagcgtgaggaggatactcgcctgctagaagaggag
accgagaacctgggcactgggcctctgaaactggactaccggacgctggccgcactgccc
accaccgctctccagaaggtcaacaggttatctccttctgtcagtgcaactctccccatg
gaggcacccattcaggcccaatgttctttcaccttagagcccctgggttttgacctgggg
cagcaccccacctccctcttccctcttccccatgctctacctcagtccggccccattatg
aacacagaggcagggcccctctacatgtcccagcactctcccagtcccttgataaccgcc
tccaatcaaggagcagctagacaagaagctctgcctactggtgaagacgaggaggtggtg
gttctggtggactcccagccaatcaacttcaccgagaaccccttcctggtggccaatcgc
aggggcaaagggtgccccccctctgagcgcatcctctcagggcctcctgtgggctacggg
agtgcgggcaaactgcagccctggttattcagcaaggcaagcagcctgcctgcctgcctg
cgtgtgtgggtttga
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