Oncorhynchus tshawytscha (Chinook salmon): 112215695
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Entry
112215695 CDS
T05605
Name
(RefSeq) transcription factor SOX-4-like
KO
K09268
transcription factor SOX11/12 (SOX group C)
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112215695
Transcription factors [BR:
otw03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
112215695
BRITE hierarchy
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GFIT
Motif
Pfam:
HMG_box
HMG_box_2
HMG_WDHD1
Rox3
SOG2
Motif
Other DBs
NCBI-GeneID:
112215695
NCBI-ProteinID:
XP_024230744
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Position
LG02:complement(39247593..39254256)
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AA seq
397 aa
AA seq
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MTPAVSLSRASSSIMVQQRGHKYLAVMDSDLSQEVFVGLGADEGEEVFGPSPSNKDPNWC
KTPTGHIKRPMNAFMVWSQIERRKIMEQWPDMHNAEISKRLGKRWKLLPDYEKIPFIKEA
ERLRLKHMADYPDYKYRPRKKSKSSMPVRVGEKVPLKTGKSHTGGRASASASSTATSKGL
KVRTPSSKHRASFHGNKFKGYDEGISDDDTVDVEMASQGASQPGGQRPALDVFHHQQAAM
TPGQQQPHLTAQLRVKLPTTTSHPPTSNLPMGLSSGSPVPQSLPESSPRVSSSSESRTPL
SSTGRSSTPTSTSSSSFVSSASSDEELDEEILHIISNANFDSMPMDCATLDKDFDAAFHT
NSGSHFDFPDYCTPEVNEMISGDLLVPSISDLVFKIY
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgactccagccgtcagtctgagtagagcatcatcctccatcatggtacagcaaagggga
cacaaatacttagcagttatggacagtgatttgagccaagaggttttcgtaggactggga
gcagatgaaggggaggaggtttttggaccgtcaccctccaacaaagaccccaactggtgc
aagactcccacgggtcacatcaagcggcccatgaatgcattcatggtctggtcgcaaatc
gagagacggaagatcatggagcagtggccagatatgcataacgcagagatctccaaacgc
cttggcaagcgctggaaactcctccccgactacgagaaaatccccttcatcaaagaagca
gagagacttcggctaaagcacatggccgactaccccgactacaagtaccggccccggaag
aagagcaagagctccatgcccgtgcgggtcggggaaaaggtccccctgaagacaggcaag
tcccacacgggtggtcgtgcatccgcttccgcatcctccacagccaccagcaaagggctc
aaggtccgaacgccttcctccaaacacagagccagcttccacggcaataagttcaaaggt
tacgacgagggcatcagcgatgacgacacagtggatgtagagatggccagtcagggagca
agccagccaggagggcagaggccagccttggatgtcttccaccaccagcaggctgccatg
acccctgggcagcagcaacctcatctcacagcccagctcagagtcaaattgcccaccacc
acctcccacccgcccacctccaacctccctatgggcctctcctctgggtctcctgtaccc
cagagcctcccagagtcgtcccccagggtgtcctcttcatcggagtcccgtacgcccctc
tcctccaccggccgctcctccacccccacctccaccagctcctcctcatttgtgtcgtcg
gcctcctccgacgaggagctggatgaggaaatcttgcatatcatctccaacgccaacttt
gacagcatgcctatggattgcgccactctggacaaagactttgatgctgcgtttcacacc
aactcaggatcccacttcgatttccctgactactgcaccccagaagtgaatgagatgata
tccggggacttgctggtgcccagtatctctgacctggtgttcaagatctactga
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