Oncorhynchus tshawytscha (Chinook salmon): 112215717
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Entry
112215717 CDS
T05605
Name
(RefSeq) LOW QUALITY PROTEIN: DDB1- and CUL4-associated factor 1
KO
K11789
DDB1- and CUL4-associated factor 1 [EC:
2.7.11.1
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
otw01001
]
112215717
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
otw04121
]
112215717
Enzymes [BR:
otw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
112215717
Protein kinases [BR:
otw01001
]
Serine/threonine kinases: Other
Other
112215717
Ubiquitin system [BR:
otw04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
Cul4 complex
Target recognizing subunit (DCAF)
112215717
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
LisH
ANAPC4_WD40
Motif
Other DBs
NCBI-GeneID:
112215717
NCBI-ProteinID:
XP_024230801
LinkDB
All DBs
Position
LG16:complement(44251858..44274720)
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AA seq
1541 aa
AA seq
DB search
MASASASVDSKAELTSLLEQWEREQQASTPDLVNILTKISELVERETEEYHKADPDPFDD
RHPGRADPECVLGQLLKILFKNDDFMNALVNSYVMTSRELTLNTAACRLLQNIMPGLETA
VVFQEKEGIVERLFKWAQEAEQPLRIYATGLLAGAMENQDIAANYREENSVVVPLMLQRL
RELQAKDTENRKGFKRPSPRKSLGEPLLPLDEETVDGGFKDNSFPPGNEGIERNEKGSDE
DRVEIHSHESYSEISFHLNYLNHTHKTSSCANSAVKGLMKPVSAPPPLSHRDFPDGREEG
STHLKRRTERETGRKVKQKLNFSLPDPERNFSELSNSSWSEMSPWVIGNNYHLYPLTPEM
EQRLILQYLTPLGEYQELLAVFMQMGACELLIHYMDLKQTNDVQLTFEALKYLASLLLHK
KFAAQFVVHGGVQKLLEIPKPSMAATGVSLCLYYLAYNQDAMERVCMLPHSILSDVVSYS
LWLLECSHASGCCHATMFFSISFSFRAVLELFDRQDGLRRMVNLISTLEILNPEDQGALL
SDDQIFSSRQTAKHTCMALRRYSEAHLAIKVEQVKQSLQRTEGGAPIHPQPYYKACSYTH
EQVVEMMEFLIEYGPVRLYWEPAEVFHKLSCVQLLLQLISIACDWRTYYGRSDTVRYALD
ILSILTVVPKTQLLMSESVAVLDGEGGNAISTVGMGVVLVVAEGEVFVNDAEIQKSALQV
VINCVCAPDKRMSGIGKFISGTPLRRLPQTTKNSESVLTKMWNVVQSNNGIKVLLSLLTV
KMPITDADQIRTLACKALVGLSRSSSVRQIISKLPLFSSGHIQQFMKEPVLQDKRSEHVK
FCKFAAELIKRVSGKPLMIGTDVSLAWLQRANVVAQSRISFPEKELLLLIRNHLVVKGLH
DTATTLTKEADLPMAILPHPSSSALLPVVVPPASPAPALPRTPRLANGVTARLVSHSSHP
SVPLSVHPQPRPSTSQLLMVPPAASPLLTPHQSNGSPLIGRIVFMRERPSPCPVPAICKK
PRVLRQKSDYGAFSQSPAMKKQLDRHLPSPPALDSIITEYLREQHXRCKNPVTTCPPFSL
FTPHQCPEPKQRRQAPTNFTSRHTRRVVYPKYGGVDGGCFDRHLIFSRFRPISVFREADE
DESGFMCCAFSARERFLMLGTCTGQLKLYNVFTGQEEASYSCHSSAITHLEPSRDGSLLL
TSASWSYPLSALWGMKSVFIMKHSFLDDHYVEFSKLSQDRVIGTKEHIAHIYDIQTGQKT
LTLHYPDLSNNYKRNCATFNPTDDLVLNDGVLWDVRSAQAIHKFDKFNMNISGVFHPNGL
ELIVNTEIWDLRTFHLLHTVPALDQCRIVFNNNGTVIYGAMLQADNEDDLLEMQMKTPFG
SSFRTFNATDYKPIATIDVKRNIFDLCTDTKDCYLAVIENQDSVNTDTVCRLYEVGRQRL
AEEEEDEEDQEDDDQEDDDDDEDDSDDDIDTDPLVAELENENGGEDEEDGNNEFSPSDDE
EVARLLEGDDDDDSDEEDGDLALDNTDSSDLEDDIILSLNE
NT seq
4626 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcggcatctgctagtgtggattccaaggcagagctgacctctctgctggagcag
tgggagagggagcagcaggccagcacaccggacctggtcaacatcctgactaagatttca
gagctggtggagagggagactgaggaatatcacaaagctgatccggatccttttgatgac
aggcaccctgggagagcggatccggaatgcgtcttgggtcagctgctaaagatcctgttc
aaaaatgatgacttcatgaatgctcttgttaatagctatgtgatgaccagtagagagctc
accctcaacactgcagcttgtcgcctgctgcagaatatcatgcctgggttggagactgct
gtggtctttcaggagaaggagggcatagtggagaggctttttaaatgggcccaggaggcg
gagcagcccctgagaatctatgctacaggcctgttggctggagctatggagaaccaggac
atcgctgccaactacagggaggagaactctgtcgtggtgcctctgatgctgcagcggcta
cgcgagctgcaggccaaggacactgaaaaccggaaggggtttaaacggcccagtcccagg
aagagtctgggggaaccgctccttcctctggatgaggagacggtcgacgggggcttcaag
gacaactctttccccccggggaatgaaggcattgagaggaatgagaagggatcagatgag
gaccgagtggagatccacagccacgagtcttacagcgagatctccttccacctcaactac
cttaaccacacccacaagaccagtagctgcgctaactccgctgtcaaaggactgatgaag
cctgtgtctgccccgccgcctctgtcccaccgggacttccccgacggcagggaggagggc
agcactcacctcaagaggagaacagagagggagactggacggaaggtgaaacagaaactg
aacttctccctgccagacccggagaggaacttcagcgagctgtccaacagcagctggtct
gagatgagcccctgggtgattgggaacaactatcacctttaccctcttaccccagagatg
gagcagagactcatcctacagtacctcacccctctgggagagtaccaggagcttctggct
gtcttcatgcagatgggagcctgtgagctgctcatccattacatggacctgaagcagacc
aacgatgtacagctcacctttgaggctctcaagtacctagcctccctgctcctgcataag
aagtttgccgcccagtttgtggtccatggaggggttcagaagctgctggagatccccaag
ccttccatggccgccacaggggtgtctctgtgcctctactacctggcctacaaccaggat
gccatggagagggtgtgtatgctgccccactctatcctgtctgacgtggtaagctacagt
ctgtggctgttggagtgttcccatgcctcgggctgctgccacgccaccatgttcttctcc
atctctttctccttccgagcagtgctggaactctttgacaggcaggacggcctccggcgc
atggttaacctgatcagcacattggaaatcctgaaccctgaggaccagggtgccctgctg
agtgatgaccagatcttctccagtaggcagacggccaagcacacctgcatggccctgcgc
aggtactccgaggcccatctggccatcaaggtggagcaggtcaagcagtccctgcagcgg
actgaagggggcgctcccattcacccacagccttactacaaggcatgtagttacacccac
gagcaggtggtggagatgatggagttcctgattgagtatggcccagtcaggctgtactgg
gagcctgcagaagttttccataagctctcctgtgtgcagcttctcctgcagctcatctcc
attgcctgtgactggaggacctactacggcaggagtgacacagtgcgttatgccctggac
atactgagcatcctgacggtggtccctaagacccagctgctgatgtcggagtctgtggcc
gtgctggatggggaggggggcaacgccatctccaccgtgggtatgggtgtagtcctggtg
gtggcagagggagaggtgtttgtgaacgatgccgagattcagaagtctgctctgcaggtg
gtcatcaactgtgtgtgcgctccagataaacgcatgtccggcatcggcaagttcatctct
ggcacgcccctcagacgtctaccccagaccaccaagaacagcgagagcgtgctcaccaag
atgtggaatgtggtgcagtccaacaacggcatcaaggtactgctgtccctgctgacggtg
aagatgcccatcacagatgcggatcagattcggaccctggcctgtaaggccctggtgggt
ctgtcccgctccagctcagtcagacagattattagcaagctgcctctcttcagcagtgga
cacatccagcagttcatgaaggagcccgtgctccaggacaaacgcagcgaacacgtcaag
ttctgcaagtttgcggcagagctaatcaagcgggtgtctggtaaacccctcatgatcggg
acggatgtctccctggcctggctgcagagggcaaacgtggtggcccagtccagaatatcc
tttcctgagaaggagctactgctgttgatccggaaccacctggtagtcaagggtctgcat
gacactgccaccacactcaccaaggaggccgacctccccatggccatcctcccccaccca
tcttcctcagctttgcttcctgtcgttgttccccctgcttctcctgcccctgccctcccc
cggacccctcggctggccaatggggtcacagcacggttggtgagccacagctctcatccg
tctgtgccgttgtcagttcacccccagcctcgtccctcaacgtcgcaactcctcatggta
cctccggccgcctctcccctgttgacccctcaccaaagcaacggctctccccttattggg
cggatcgtgttcatgcgagagcgcccgtcgccgtgccccgtgcctgccatctgtaagaag
ccgcgggtgctgaggcagaagtcagactacggtgccttcagccagagtccagccatgaag
aaacagctggacagacacctgccctctccccccgccctggacagcatcatcacagagtac
ctgagggagcagcacnngcgctgcaagaaccccgttaccacctgcccccccttctccctc
ttcaccccccaccagtgccctgagcccaagcagaggcgccaggccccaaccaacttcacc
tcccgacacacacgcagggttgtctacccaaaatacggaggggtggatggcggctgcttc
gaccgacacctcatctttagcaggttccgacccatctctgtgttcagggaagcagacgaa
gatgagagtgggttcatgtgctgtgccttctctgcccgtgagcggttcctgatgctgggg
acgtgtacgggccagctcaaactctacaatgtgttcacaggccaggaggaggccagctat
agctgccacagctctgccatcacacacctagagccatcacgggatggctctttgttgttg
acgtcagcatcatggagttatcctctgtctgcactgtggggcatgaagtcagtgttcatc
atgaagcattccttcttagatgaccattatgtggagttcagtaaactttcacaagaccga
gtcattggcacaaaggaacacatagctcacatctacgacatccagacagggcagaagacc
ctcaccctccactacccggacctgtccaacaactacaagaggaactgtgcaacctttaac
cccaccgacgacctggtgctgaacgacggcgtgctgtgggatgtgcgctcagctcaggcc
atccacaagttcgacaagttcaacatgaacatcagcggagtgttccaccccaacggcctg
gagctcattgtcaacactgagatttgggacctgcggaccttccacctgctccacacagtg
ccagctctggaccagtgcaggatcgtcttcaacaacaacggcacggtcatctacggagcg
atgctacaggcagataatgaggacgatctattggaaatgcagatgaagactccctttggc
tcctccttcaggacgttcaacgccactgactacaaacccattgccaccatcgacgtgaag
aggaatatatttgacctctgcacggatactaaggactgctacctggctgtgatcgagaac
caagactcggtcaacacagacacggtgtgcagactgtacgaggtgggacgccagagactg
gctgaggaggaggaggatgaggaagatcaggaggatgatgatcaagaggatgacgatgat
gatgaagatgactctgacgacgacatcgacacagacccactggttgccgagttggaaaat
gaaaatggaggagaggacgaggaagatgggaacaatgaattctctccctctgacgatgaa
gaggtagctcgtctgcttgagggggatgatgatgatgactcggatgaggaagatggggac
cttgccctggataacacagacagctcagaccttgaggatgacataatcctgtccctgaat
gagtga
DBGET
integrated database retrieval system
