Oncorhynchus tshawytscha (Chinook salmon): 112215723
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Entry
112215723 CDS
T05605
Name
(RefSeq) RNA-binding protein 39 isoform X1
KO
K13091
RNA-binding protein 23/39
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
otw03041
]
112215723
Spliceosome [BR:
otw03041
]
Common components
Common spliceosomal components
General mRNP proteins
112215723
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_occluded
RRM_7
RRM_5
Motif
Other DBs
NCBI-GeneID:
112215723
NCBI-ProteinID:
XP_024230813
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Position
LG16:complement(44565265..44593238)
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AA seq
538 aa
AA seq
DB search
MADDFDVEAMLEAPYKKTCQTISPLFSHLLIRVRTVCWGESDEIKSSSANGNEERSSKKK
KRSHRRSSRSPSSDKCYSKDGKKSPEKKRSHSKERRRSGSRSREHAGRYRGCRGPFWKRS
RSCSPFKKDKSPVRKPIDNLTPEERDAHTVFCMQLAARIKPRDLEDFFSAVGKVRDVRMI
SDRNSRRSKGIAYIEFLDVNSVPLAIGLTGQRLLGVPIIVQAPQAEKNRAAAMANNLQKG
NAGPMRLYVGSLHFNITEDMLRGVFEPFGRIESIQLMNDSETGRSKGYGFISFADAECAK
KALEQLNGFELAGRPMKVGHVTERTDPSTASSFLDNDELERTGIDLGTTGRLQLMARLAE
GTGLQIPPAAQQALQMSGSIHSTPIHFVNMAAGTDIQASLNPPPEAPATLSLNLAPCMNQ
AMTLSTQPLATHCLQLSNMFNPQLEKEPGWDVEIQDDVIEECNKHGGIVHIYLDKNSPRG
NVYMKCPTIPTAMAAVNALHGRWFAGKMITAAYVPFPTYHNLFPDSVTAAQLLMPVRQ
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atggcagacgactttgatgttgaggctatgctagaggctccatacaaaaagacttgccaa
acgatatctcccctcttctctcaccttttgattcgagtgagaactgtgtgttggggggag
agtgatgaaataaagtcctctagtgctaatgggaatgaagagcgcagtagtaagaagaaa
aagaggagccatcgtaggagtagtcgcagcccgagctctgacaagtgctacagcaaagat
gggaagaagagtccggagaagaaacgcagccacagtaaagaacgccggcgcagtggttcc
cgtagcagggaacatgctggacgctacagaggatgccggggccccttttggaaacgctca
agaagttgtagccccttcaagaaagacaagagtccagtaaggaaaccaattgacaacctg
accccagaggagagggatgcccacactgttttttgtatgcagctggcagccagaatcaaa
ccacgagacctagaggacttcttctcagccgtggggaaagtgagagacgtgaggatgatc
tctgacagaaactccaggaggtcaaagggcattgcctacattgagtttctggatgtgaat
tcagtcccgctggctattggcttaactggtcagagacttctaggagtgcccatcatcgta
caggcccctcaggctgagaagaacagagctgcagcaatggccaacaaccttcagaagggt
aatgctggccctatgcggctgtatgtgggctctctacacttcaacatcacagaggacatg
ctgcgaggtgtcttcgagcctttcggaagaattgagagcatacaactgatgaatgacagt
gaaactggacgatccaaaggatatggtttcatctcctttgcagatgcagagtgcgctaag
aaggccctggagcagctgaatggctttgagctggccgggcggcccatgaaagttggtcac
gtgacggaacgcaccgacccctccaccgccagctccttccttgacaacgatgagctggag
aggacaggcattgacctgggcaccaccgggcgcctgcagctcatggcccggctggcagag
ggtactggtcttcagatccccccggctgcacagcaggctctacagatgagtggttccatc
cactcgactccaatccacttcgtcaacatggcagctggtacagacatacaagccagcctg
aacccaccccctgaagctcctgccaccctttcactgaatctggctccatgcatgaaccag
gccatgaccctctcaacgcagccactggctacgcactgcctacagctgtccaacatgttc
aaccctcagttggaaaaggaacctggctgggatgtcgagattcaagatgacgtcattgag
gagtgcaacaaacacggtggaattgtccacatataccttgacaagaactcccctcggggc
aacgtgtacatgaaatgcccgacaatcccaacagcaatggctgcagtgaatgcgctacat
gggcggtggtttgctggtaaaatgatcactgcagcgtacgtaccttttccgacctaccat
aacctttttcctgattcggtaactgcagcccagttattgatgcctgtgcggcaatga
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