Oncorhynchus tshawytscha (Chinook salmon): 112215777
Help
Entry
112215777 CDS
T05605
Name
(RefSeq) cadherin-4-like
KO
K06797
cadherin 4, type 1, R-cadherin
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
112215777
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
otw04515
]
112215777
Cell adhesion molecules [BR:
otw04515
]
Cadherins
Major cadherins
112215777
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
CADH_Y-type_LIR
Cadherin_pro
DUF2304
Motif
Other DBs
NCBI-GeneID:
112215777
NCBI-ProteinID:
XP_042155178
LinkDB
All DBs
Position
LG16:complement(47753290..48158018)
Genome browser
AA seq
936 aa
AA seq
DB search
MKTSLVLLLTSALQQAAFWETNGDLVSKAPCRPGFSQSSYSVLISRDVLQSQSIIKDTTV
SSRKVRFDDCMENEGVVFQSGDARFSVGTDGSIYTQREVAGLSGPVQFTVTASGPHTHVW
ETTVKLALTGQPTPSPPGNQIRVEQGKEGERKEEEEVKASPEFQAPPTVIMFPRQREMSS
KVLRRQKRDWVIPPINVPENSRGPFPQMLVSIRSDQDRNISIRYSITGVGADQPPNEVFS
IDPVAGKMFVTKPLDRERRSSYHLRAHAVNMNGERVESPIDLYIYVIDMNDNRPEFKNQV
YNGSVDEGSKPGTFVMHLAAFDNDDNTTANGMVRYRILSQTPHSPIPNMFTINSETGDIV
TVAAGLDREKVSQYSIIVQATDMEGNLNFGLSNTATAIISVTDINDNPPELTSRTFSGEV
PENRVNVVVANLTVIDRDQPHSPNWNAVYRIISGDPIGHFTIITDQHTNDGMVTVVKPVD
FEQNRAFMLTVVVNNQAPLASGIQSSLQSTSGVTISVVDINEPPYFPTNPKSIRFEEGVP
AGTSLTTFSASDPDRFMQQSIRYSKLADPADWLSINNTNGQIITTATLDRESIYVKNNIY
EATFLAVDNGSPMASGTGTLQIYLIDVNDNAPSLLPRESQICERINRNAGINITAADTDT
DPNVGPFVFELPTFPASIRRNWTVSRLNGDYARLSLRTQYLEPGVYEVPVIVTDSGNPPL
SNRSIIKVKVCPCDENGDCTLVGAVAAAGLGTGAIIAILICIIILLSMVLVFVLWMKRRE
KERQTKQLLIDPEDDVRDNILKYDEEGGGEEDQDYDLSQLQQPDSLEHIISKPPGVRRVD
ERPIIPESQYPIRPVVPHPGDIGDFINEGLRAADNDPTAPPYDSLLVFDYEGSGSTVGSV
SSLNSSSTGDQDYDYLNDWGPRFKKLADMYGGGDDE
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacctctctcgttctcttgctgacatcagccttacaacaagccgcgttttgggag
actaatggagacctcgtgtccaaagccccctgcagacccggcttctcgcaaagttcgtac
tctgtgctcatttcaagggatgtactgcaaagccagagcataattaaagataccaccgtg
tcatcgcggaaagtgaggtttgatgactgtatggagaacgagggggtggtctttcagagc
ggtgacgccaggttcagcgttgggaccgatgggtccatctacacccagagagaggtggca
ggcctgagcggaccggtccagttcacggtcactgccagcggtccacacacacacgtgtgg
gagacaacggtcaaactggccctgacggggcaacccacaccctcaccgccgggcaatcag
atcagagtggaacaggggaaagaaggggagaggaaagaggaagaggaggtcaaagcatca
ccagagttccaggccccacccaccgtcatcatgtttcccaggcaacgggagatgagctcc
aaggtactgcggagacagaagagagactgggtcattccgccaatcaacgtgcctgaaaac
tccagagggcccttcccacagatgctcgtcagcatccgttcggaccaggaccgtaacatc
tccatccggtacagcatcacgggggtgggagcggaccagccacccaatgaggtgttcagt
atcgaccctgtcgccgggaagatgttcgtcaccaaacccctggaccgagagaggagatcg
tcgtaccatcttcgtgcccatgcagtgaacatgaatggtgagcgggtggagagccccata
gacctgtacatctatgtcatagacatgaacgacaaccggcctgaattcaagaaccaggtc
tacaacggctctgtggatgagggctccaagccaggtacatttgtgatgcacctggcagcc
ttcgataacgacgacaacaccacggccaatgggatggtgcgctaccggatcctgtcccag
acgccacacagccccatccccaacatgttcaccatcaacagcgagactggagacattgtc
accgtggcagcaggcctcgaccgcgagaaagtatcccagtacagcatcatagtccaggcc
acggacatggagggcaacctaaactttggcctgtctaacacggccaccgccatcatctct
gtcacagacatcaacgacaacccgccggagctcacctccagaaccttttcaggggaggtc
ccagagaaccgggtcaatgttgtggttgccaacctgaccgtgattgaccgggaccagcca
cactcgcccaactggaatgccgtgtacaggatcatcagcggagacccgataggtcacttc
accatcatcaccgaccaacacaccaacgacggcatggttaccgtagtgaagccggtggac
tttgagcagaacagagccttcatgctgacggtggtggtcaacaaccaggccccgctggca
agtgggatccagtcgtccctccagtccacatctggggtcaccatctctgtggtagacatc
aacgaaccgccctacttccctactaaccccaagtccatccgctttgaggagggcgtcccc
gctggcacctctctcaccacattctcagccagcgaccctgaccgtttcatgcagcagagc
atcaggtattctaaactggccgacccagctgactggctgtccatcaacaacaccaacggt
cagatcatcaccacggcaaccctggacagagagtccatctacgtcaaaaacaacatttat
gaagccaccttcctcgcggttgacaatggctctcccatggccagtggtacagggaccctg
cagatctatctgatagatgtgaatgacaacgctccgtctctgctgccccgcgagtctcag
atttgtgagcgcatcaaccgtaacgccggcatcaacatcacggctgcagacacagacacg
gaccccaacgtaggccctttcgtcttcgagctgcccacgttccccgctagcatacgacgt
aactggacagtgtcacgtctcaacggtgactatgcccggttgagtttacggacccagtat
ctggagccgggggtgtatgaggtgcctgtgattgtgaccgattcggggaaccctcccctc
tccaacaggtccattatcaaggtcaaggtgtgtccatgtgatgagaacggagactgcacc
cttgtcggggctgtggctgccgctggacttgggactggagccatcatagccattctcatc
tgtatcatcatactgctcagtatggtgctagtgtttgtattgtggatgaagcgcagagag
aaggagagacagaccaaacagctgctgattgacccggaggacgatgtcagagataacatc
ctgaaatacgatgaggagggagggggagaggaggaccaggactatgacctgagtcagctg
cagcagcctgactccttggagcacatcatcagtaagcccccgggggtacgaagggtggac
gagcgccccatcatcccggagtcccagtaccccattcgaccggtggtcccccaccctggg
gacatcggggacttcatcaatgaaggtctgcgggcggcagacaatgaccccacggcccct
ccctatgactccctcctggtgtttgactacgagggcagcggctctacggtcggctccgtc
agctccctcaactcctccagcacaggggaccaggactacgactacctcaacgactggggc
ccccgcttcaagaagctagccgacatgtacgggggaggggatgacgaatag
DBGET
integrated database retrieval system
