KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112215819
Entry
112215819         CDS       T05605                                 
Name
(RefSeq) charged multivesicular body protein 4c
  KO
K12194  charged multivesicular body protein 4A/B
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03250  Viral life cycle - HIV-1
otw04144  Endocytosis
otw04217  Necroptosis
Brite
KEGG Orthology (KO) [BR:otw00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    112215819
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    112215819
  09143 Cell growth and death
   04217 Necroptosis
    112215819
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:otw04131]
    112215819
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:otw04147]
    112215819
Membrane trafficking [BR:otw04131]
 Endosome - Lysosome transport
  Endosomal sorting complexes required for transport (ESCRT)
   ESCRT-III complex
    112215819
Exosome [BR:otw04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   112215819
  Exosomal proteins of other body fluids (saliva and urine)
   112215819
  Exosomal proteins of colorectal cancer cells
   112215819
SSDB
Motif
Pfam: Snf7 DUF6437 MethyltransfD12 SYF2
Other DBs
NCBI-GeneID: 112215819
NCBI-ProteinID: XP_024231003
LinkDB
Position
LG16:49709680..49719080
AA seq 222 aa
MSVFGKLFGGGGKGGKGPSPQDAIQKLRDTEQMLAKKQDFLEKKIDQELITAKKNGTKNK
RAALQALKRKKRYENQLTQIDGTLSTIEFQREALENANTNTEVLKNMGFAAKAMKAAHEN
MDIDKVDDLMQDITEQQELAQEISDAISKPVGFGEEFDEDELLAELDELEQEELDKNLLE
IGGTEDSHLPNVPSTSLPSRPAKEDEDEDDMDDLQRWAMEAM
NT seq 669 nt   +upstreamnt  +downstreamnt
atgtccgtgtttgggaagctgttcggcggtggggggaaaggagggaaagggccgagtcca
caagatgcgattcagaaactccgagacacagagcagatgttagcgaagaaacaggacttt
ctagagaaaaagattgaccaggaactcataactgcaaagaaaaacggcacaaaaaacaaa
cgagcggccctgcaggccttgaaaaggaagaagcggtacgagaaccagcttacccagatc
gatggcacattgtccaccatcgagttccagagggaggcgctggaaaatgccaataccaat
actgaagtgctcaaaaacatgggctttgccgccaaggcaatgaaggctgcccatgaaaac
atggacatagacaaagtagatgacttgatgcaagacatcactgagcagcaggagctggcg
caagagatctcagatgccatctcaaaacctgtaggctttggagaggagtttgatgaggat
gaactcctggcagagttggatgagctggaacaagaggaattggacaaaaacttgctggag
atcggcgggacagaagattcccatctacccaatgtgccttctacttcattaccctccaga
ccagccaaggaggatgaagacgaggatgacatggatgacttacagcgctgggcgatggag
gccatgtag

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