Oncorhynchus tshawytscha (Chinook salmon): 112215895
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Entry
112215895 CDS
T05605
Name
(RefSeq) TBC1 domain family member 25-like isoform X1
KO
K24799
TBC1 domain family member 25
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112215895
Membrane trafficking [BR:
otw04131
]
Others
Rab GTPases of specific organelles
Auto phagosome
112215895
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RabGAP-TBC
Motif
Other DBs
NCBI-GeneID:
112215895
NCBI-ProteinID:
XP_024231133
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All DBs
Position
LG16:52583583..52607379
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AA seq
862 aa
AA seq
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MCLQLMVTLFVIVSHIPQKWEGMLPVELRSFAVDPQITSLEVLQHILIRAFELNGKRNFG
ISYLSQDRGGVEVYLSLLSDWDLEAAFVSAAKPYLQLKMDMNLSEDSPIMEDWDIISPKD
VIGSDQLPGDRRSLAAAALPFTQSLLSQMMGRTLSRVQQALSWSYGEEVKPFKPPLSDAE
FHSYLNGQGQLSRPEELRLRIYHGGVEPSLRKVVWRYLLNVYPDGLTGQERMDYMKGKTR
EYDQLKGEWSARASPEDLEFIRGNVLKDVLRTDRAHPYYAGSEDSPHLTALTDLLTTFAI
THPQVSYCQGMSDIASPILAVMDNEAHAFICFCGIMKRLEGNFRPDGHFMSVKFQHLKLL
LHYSDPEFYCYLVSRGADDLFFCYRWLLLELKREFAFDDALRMLEVTWSSLPPDPPETEV
ELHGPPLETDQTIVTCESGVEKRPAITGDDGNEGELKEKQRRRHMLRPSREEADGGRKIK
MEDREREDRGARSEGEGNFDMPDVGKEKAHNNMPVPSFEKQTSFGEFKYYSARNKDSFDF
EQTDPPVGPVEMEAASHPWERAPLIKDINKSSSPDTEARSSPNGQMASPVSSFPPGLPNW
KNVSSLSPGSTSSPSSWRGASPDTPSPKFTSPILPNGRMAVPNGTGANSPATPTGRSLVS
SPLLSRALLSSPILSFGRALPSLPVGPVNKSFSSNLQSPCSRAFSTAPHTPNSTKPENTT
IKPCSLPPPQEFGKGNPFMLFLCLSILLEHRDHIIKNGFDYNELAMHFDRLVRRHNLGRV
MQRAKALFADYLQSEVWDSEEGDEVSSDSPTTVTAALYSPPPSATRLLFTPLSSPQPSSP
NSTYNLADTIPSPSPVSLSPSS
NT seq
2589 nt
NT seq
+upstream
nt +downstream
nt
atgtgcctacaattaatggttacattgtttgtgattgtttctcacattcctcagaagtgg
gaggggatgctgccagtggagctccgctcgtttgctgtggatcctcagataacatcacta
gaggtgctacagcacatcctcatccgagcctttgagttaaatggcaaacgcaactttggc
ataagttacctgtcccaggaccgtggaggtgtggaagtgtatctctctctcctttctgac
tgggatttagaagctgcttttgtcagtgcagctaaaccttatctacagctcaagatggac
atgaatctctccgaagacagtcccattatggaagactgggacataataagccccaaagat
gtgattggttctgaccagcttcctggggataggaggtctttggctgctgccgcccttccc
ttcacacagtccctgctctcacagatgatgggtcgaacactgtctagagtacagcaggcc
ttgagctggtcgtatggggaggaggtgaagcctttcaagccccctctgagcgatgccgag
ttccacagttacctcaacggccaggggcagctgtcccggccagaggaactgaggctacgt
atctatcatggtggggtggagccctctctacgcaaggttgtctggcgatacctcctgaac
gtgtaccccgatgggctgaccggtcaggagagaatggactacatgaagggcaagactagg
gagtatgaccaactgaagggggagtggtcagcgagggccagtccagaggacctggagttc
atcaggggcaacgtactgaaggacgtcctgaggaccgaccgggcccatccctattacgct
ggctccgaggacagcccccacctcactgctctcaccgacctgctcaccacgtttgccatt
acacatccacaggtgtcgtactgccaaggcatgagtgatattgcttctccgatacttgcc
gtcatggacaatgaggcacatgcattcatctgtttctgtggcatcatgaaacgcctagag
ggaaacttccgtccggatggccatttcatgtccgtcaagttccagcatctgaagctgcta
ctgcactactcagaccctgagttctactgttatttggtgtcccgcggagctgatgacctc
ttcttctgttaccgctggctgctcttggaactcaaacgggagtttgctttcgacgatgcc
ctaaggatgctggaggtcacctggagctccctgccccctgaccctcccgaaacagaagtg
gagcttcatgggccgccgctagaaacagaccaaaccatagtgacatgtgagagtggtgtt
gaaaagaggcccgccattacaggggatgatggaaatgaaggggagctgaaagagaagcag
cggagacgacacatgttgaggccctcaagagaggaggcagatggggggagaaagatcaaa
atggaggatagagagagggaggacagaggagccagaagcgagggtgaggggaactttgac
atgcctgacgtgggaaaggagaaggctcacaacaacatgcctgttccttccttcgagaag
cagaccagctttggcgagttcaaatactacagtgcacggaacaaagacagctttgatttc
gagcagacagacccaccagtgggtcctgttgagatggaagccgcctcacacccatgggag
agggcgcctcttataaaggacattaacaagtcttccagcccagatacagaggcgaggagc
tccccaaatggacaaatggcctctccggtctcctcgtttcctcctggtctgccaaactgg
aaaaacgtttcctctctgtctccaggctccacttcctccccctcaagttggagaggtgcc
tccccggacaccccgtcaccaaagttcacctctcccattttacccaacggaaggatggcg
gtgccgaatggaaccggagccaactcacccgctacccccacagggaggtccttagtttcc
tctccgctgttgtctcgagcgttgctctcctcgccaattttgtcctttggaagagctctt
ccttcgctgcccgttggaccggtgaacaagtccttttctagtaaccttcaatctccttgc
agcagagcttttagcactgcgcctcacactccaaattcaaccaaaccagagaataccacc
atcaaaccttgttccctgccacctcctcaagagtttggcaaaggaaatcctttcatgttg
ttcctgtgcctgtcgatcctgctggagcatcgggaccacattataaagaacggctttgat
tacaacgagctggctatgcactttgaccgccttgttcggcgacacaatctgggcagggtg
atgcagcgcgccaaggccttgtttgcagactacctgcagagtgaggtatgggactcagag
gaaggggatgaggtcagctcggattcgcccaccacagtcactgctgctctgtattccccg
cccccctctgccaccaggcttctttttacccctttgtcatccccacaaccatcctcccca
aactccacctataacctggctgacaccataccttccccgtcacctgtctccctctcgcca
tcctcttga
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