Oncorhynchus tshawytscha (Chinook salmon): 112215947
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Entry
112215947 CDS
T05605
Symbol
lrif1
Name
(RefSeq) uncharacterized protein lrif1
KO
K23220
ligand-dependent nuclear receptor-interacting factor 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
otw03036
]
112215947 (lrif1)
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
112215947 (lrif1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRIF1
Motif
Other DBs
NCBI-GeneID:
112215947
NCBI-ProteinID:
XP_024231233
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All DBs
Position
LG16:complement(55257181..55270558)
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AA seq
1200 aa
AA seq
DB search
MSNLNISYSNQGKTMASQGACRSGTGVFYQAMPAVGTDGRNVMKLIPVQKVNGQFVRSPT
STMKDISEPQRDLTLDVPSISKINMSTLGPTARGQSVNKRSFYMSTSQNPTNLTGIYKSV
SIQTPIVTTKVAQSALSLTSPELTLLNKDQLPVTVKSPALPNGQYLQIPPNAQVKTLPAS
ALPPAIKRQIFTSSTSCASNSNLPMVLYVSPVQTMKPGGTPLCPTFQKAPLSLSRLPRPS
GQTHSKCSSSGSTPCSTTAKDGKRPVTPIKWVIEEADGSPAQCLVPVNSSSMTSDILKTL
AEMEKATKPCENTAKKCSPSQESQTRIGQEKDNALVMYNGKVYFVAKKTPELCNRPSKPL
EASRNMGDSTTQAAESVGFNQRISLPPSLPLSSSLGSQFSNKTRPDPKHIVIPDDIIDLC
DDDPQDDLAYQAISTRDVTRQPFRQSEVDEDEDSNVIFVSYLPPKTVSKVAEEDKEMAHM
LNDLEAEQEVLCSQDHLNGQIVDNQNKVSGLSIEKCQSIATAQDMAGCQGSATGQELNSR
QHDITGQYRKILQRFHGRATGIRIENIQGNATSKEMGSSHPSSSTQEMGNVQDDATDQGI
GNSQHHPATQEMDNITGSTSLQTEMETHKEKSSSDPIPEQRTSVLDMESLETCDRLLKQM
FGITSDVKICLERIDAKPKAIPKAFPRIGTTNKRTIEAIRKLLQGSNILIKKREHKETEV
SATRKDGSCPIDAKRQKIEKVKNASESSENTEPLTSPTPQLEKQPLTNPTPQLEKQPLTN
PTPQLEKQPLTSLTPQLEKQPLTSPTPQLKKQPLTSPTPQLEKQPLTSPTPQLEKQPLAS
PTPQLEKQPLTSPTPQLEKQPLTSPSPQLKMQPLTSPSPQLKMQPLASPSPPMKMQPLAS
PTPQLEKQPLTSPSPQLKMQPLASPSPQLKMQPLASPTPQLEKQPLTSPSPQLKMQTLAS
PSPQLKMQPLTSPSPQLDILSDAEHIFGYEEPTVSYLISTAVETGVPSKPLPEINSVHIS
KRSSNSPVPSVHPQTNAEAMDCAPGPFCGTASNIKPNSRRRRGKGKRCTACPCGVTGTLV
QEKAMSLSSTSQEEPSSSKPPNTRSSGSSTFAIAKSAKRKGRKSTKAQMEDKELTSVEIQ
CPSTVSEQGSSTAGEIPTSYLCSTALMDPEEIKRHERIKRLKELLKEKEAALAMIRKNMG
NT seq
3603 nt
NT seq
+upstream
nt +downstream
nt
atgagtaacttgaatatctcatacagtaatcaaggcaaaacgatggcatctcaaggcgcg
tgtcgcagtgggacaggtgtcttttaccaagcgatgccagctgtgggaactgatgggaga
aatgttatgaaactgatccctgttcaaaaagtaaacggacagtttgttcgatcaccaaca
agcactatgaaggacatctctgaacctcaacgagatcttaccttggacgtgccatcaatt
tcgaagattaacatgtctactctgggacccacagctagaggacaatctgtgaataaaagg
tcattttacatgagtacctctcaaaatccaaccaatctgacaggaatatataaatcagtg
agcatccagactcctatagtaacaacaaaagtagcccaaagtgcgttatccttgacatca
cctgagctaacacttttgaataaggatcagctgccagtcactgtgaaatctccagcgctt
ccaaatggacaataccttcaaattcctcctaatgctcaagtgaaaacccttccagcatcc
gcactccccccagccataaagaggcagatatttacttcatcaacgagctgtgcctcaaat
tcgaatttgccaatggttctttatgtgtcccctgtccaaaccatgaaaccgggtggtact
ccattatgtccaacatttcagaaggcacccctctccctcagccgacttccaaggccatct
ggccagacacattctaaatgctcatcatcaggctcaacaccgtgttctactactgctaag
gatggcaaaagaccggtcactcctattaagtgggtgattgaggaggcagatggctcacct
gctcaatgccttgttcccgtgaattcctcttctatgacctcagatattttgaaaactctg
gcagagatggaaaaagccaccaaaccctgtgaaaacacagcaaaaaagtgttcaccttcc
caagagagtcagacaagaattggccaagagaaggacaatgccttagtgatgtacaatggg
aaggtgtattttgttgccaagaaaacccctgagctttgtaaccgaccatcaaagcccttg
gaggccagtaggaacatgggtgactccaccacacaggcagcagaaagtgttggattcaat
cagagaatcagcttaccgccctccctacccttaagctcctcacttggatcacaattttca
aataaaaccagaccagatcctaaacacattgttataccagatgacatcattgacctctgt
gacgatgatccccaagatgaccttgcatatcaggcaatatcaacaagggacgtaacaagg
caacctttcagacagtctgaagtcgatgaggatgaagactccaatgtaatatttgtctca
taccttccacccaaaacagtgtctaaagtagctgaagaagacaaggaaatggctcatatg
ctgaatgacttggaagctgaacaagaagtgttatgcagtcaagatcatttgaatggccag
atagtggataatcagaacaaagtatctggcctgtcaatagaaaagtgtcagagcattgcc
actgcccaagacatggcaggctgtcaaggtagtgcaacaggccaagagttgaactcccgc
cagcatgacatcactggtcagtataggaaaattcttcaaagatttcatggccgtgcaact
ggaatccgaatagagaacattcaaggtaatgccactagcaaggaaatgggaagcagtcat
cccagttcctcaacccaagaaatggggaatgtccaggatgatgccactgaccagggaatt
ggaaacagccagcaccatcctgccacgcaagaaatggacaacattactggaagtacctct
ctacaaacagaaatggagactcacaaagaaaagagctcatcagatcccatccctgagcag
cggacttctgtgttggacatggaatccttggaaacttgtgatcgcctgctgaaacagatg
tttgggatcacatctgatgtgaaaatatgtttggagaggattgacgctaaacccaaggct
atccctaaggcgtttcctcggattgggaccacaaacaaacgtaccatagaggctattcgc
aaattgttacagggatcaaacattttgataaaaaagagggaacacaaggaaacagaggtc
tctgcaactaggaaggatggtagttgcccaatagatgctaaaagacagaaaatagaaaaa
gtaaaaaatgcatctgaaagttcagaaaacacagagcctctcaccagtccaactcctcag
ctggaaaagcagcccctcaccaatccaactcctcagctggaaaagcagcccctcaccaat
ccaactcctcagctggaaaagcagcccctcaccagtctaactcctcagctggaaaagcag
cccctcaccagtccaactcctcagctgaaaaagcagcccctcaccagtccaactcctcag
ctggaaaagcagcccctcaccagtccaactcctcagctggaaaagcagcccctcgccagt
ccaactcctcagctggaaaagcagcccctcaccagtccaactcctcagctggaaaagcag
cccctcaccagtccaagtcctcagttgaaaatgcagcccctcaccagtccaagtcctcag
ttgaaaatgcagcccctcgccagtccaagtcctccgatgaaaatgcagcccctcgccagt
ccaactcctcagctggaaaagcagcccctcaccagtccaagtcctcagttgaaaatgcag
cccctcgccagtccaagtcctcagttgaaaatgcagcccctcgccagtccaactcctcag
ctggaaaagcagcccctcaccagtccaagtcctcagttgaaaatgcagaccctcgccagt
ccaagtcctcagttgaaaatgcagcccctcaccagtccaagtcctcagctagacatctta
tctgatgctgaacatatatttggctatgaggaaccgactgtcagttatctaatttccact
gcagttgaaacaggggtcccttccaaacctctgccagaaatcaattcagtacatatttca
aaaagaagctcaaactcacccgttccatctgtccacccacaaacaaacgctgaagctatg
gattgcgctcctgggcccttctgtggcacagcaagcaacataaagccgaactctagaaga
agaaggggaaaagggaaaagatgcacagcgtgtccgtgtggggtgactggaacactagta
caagagaaagcaatgagcttatcatccacttcacaagaggagcctagttcatctaaacca
ccaaacaccaggtcctcagggagcagtaccttcgcaattgcaaaatcagctaaacgaaag
ggtagaaagtccacaaaggctcaaatggaagataaagagctaacatctgtggagatccaa
tgtccttcaactgtgagtgagcagggaagtagtacggctggagagatcccaaccagttat
ctctgctctacagcactcatggaccctgaagaaatcaagcgtcatgagagaatcaaacga
ctgaaagaactcttgaaggagaaggaggctgctcttgcaatgattagaaagaacatgggc
tga
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