Oncorhynchus tshawytscha (Chinook salmon): 112215967
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Entry
112215967 CDS
T05605
Name
(RefSeq) synaptonemal complex protein 2
KO
K19529
synaptonemal complex protein 2
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
otw03036
]
112215967
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Meiosis-specific proteins
Synaptonemal complex
112215967
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SYCP2_ARLD
SYCP2_SLD
Cor1
DUF4812
Motif
Other DBs
NCBI-GeneID:
112215967
NCBI-ProteinID:
XP_024231265
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All DBs
Position
LG16:complement(56342895..56404296)
Genome browser
AA seq
1684 aa
AA seq
DB search
MMAPPQDPQLEKLVDEVLKNSNFQALGDFLQDDEGTTWRCSKQFLAKLDKLVSRELDHRN
VKHACLGLTILHKFGKNLALPGGQGLSGMVLQGLVKKMVQWFEKARMLWIEACTQRNETL
LNLAEDLFDSVMVVHETSLEGTYQVTECFLHLIGQLAADPRIHIMIQKEAIRKLNIILDK
IPAELKKEKKILSSQEASDLMNNLASRIVEGGDYDLQIALMEALCRMTTRAQRKELADDW
FSMEFVASTFSKIQDSEFETDCRRFLNLLNGMQGDGRRVFSYPCLEVFLDKHELLMPADE
KLEEFWIDFNLGSQSVSFYFSLADEDAQEGQWDTACIPENEVHSYTVTEEGRRRVLKLKL
TEPLCVSGVEGSHLTIHFSSSLDIMQAARSVYGNKNKSFVGKRRTSVVKTTVKIVMDDNC
SQALVPESQMSPDADMERERDSVPCLLPPRPSGPLQMVTPAKRRVSESSTFITSSGGGRG
TGASPFSVVMAASTPRGSRPKVKPAIELVRSCERQGQSGLGELRTAKPHYNAAPGITLSH
SRSEQMDAVVALSQSKATKQDTRAGPVAEKYRRHIPVDKVVEMVQTDQAEEEELLDSSIV
PDSQPTMKTESTIFSHWRKVSVSEMLLPVQRGFQKALPKPELENVEQQERPSSAQRGSGS
VPGSAVSHKQLHAQLTQRLEEVLRKRDRGTGPEERAGVQIRVPEERGGPQDRGSRERAGA
QGGSGPEEQSGAQGGRGPEEQDGARGGRGPEERGEPTGRGAKVSRQDAGRPGQTKGKPKS
QKSQETEATPGKAPVKPTPAKDIQERATPNSKVKATGSNSSKDKREEVVTGTMMRLISSH
YENSTSSTTIKSPVESVPRWPLPPTNRSVLEKSWLPPSMVGTAKAQGYMKSYTNSKKPSA
EQQGDDVFAFKVDTSMTTGGEGKMSSDTSAIDSSATHNSWAFPSTAKKGQAVKSQVAAQR
RHVKKHLFSDTDTDAMMEISWLKESSRKPKPKVIDYSRQPRLHPPAPNTTYESPDLPPSS
PKPVKEKAKPKKKRQRVKERSVEQKENSGAALVAAGTSQAARRPQRAAATNAKSYREPDS
ASQSETEEPPAPKKRSIGPAEKIEKVCQEAVEVKKKKATTPAKEQTNVPKESSWAARLAS
FKPSPPAIERMRAASERSLIALPRSLLTPLGSLSASPASGPSSPLALELPPEHPRSSAGF
QPSSFYSAPGRKSDRKAKDPSLPSLPSFPSLTPTGKTPGLRAQRPSALELSPIQPALSPA
QSPLLCPPSQLLLTSTALQKSVLPSPLLQSQPSPGETDQFALHFGFPGQLGLPESFDKES
LVSRVKLSQSSSRSEMSSTRVEAVNPVALTTALEKTPYSERRHKLDQRSFHLSGPCTGRK
RHNSRPSSSNSEEEGKSGTRRGRQAVKMRPRKLFKPTAKPNLHAQAQAWEEQSSSDEEEE
EEKKGNGTKDRASLATTKIYHHIQSSKSARDTVMDVSPEGDLSRVVSSHMVTSSSWEADV
EAEVEGELDRSPHDMGNMCRQFSSELQRKFQNRSRRMELYTKQSLKTVQQHVSSISMRVQ
NYRSQKLEQVRGVLLKEINNLEEDESTLKNMEKELTTYWRKQSVAFHSYQEKETRRLQSL
KSTFQTDVCHSLEYEERIFTSQMCLMRKDMKSVQDRLFKEMQDEEIMSVRRGLQALFLPE
GPRF
NT seq
5055 nt
NT seq
+upstream
nt +downstream
nt
atgatggcgccacctcaggacccacagttggagaagctggttgatgaggtgcttaagaac
agcaattttcaggcattgggtgatttcttgcaagatgatgagggaacaacttggagatgt
tccaaacaattcctcgccaaattggacaaacttgttagtagggaattagatcacagaaat
gtcaagcatgcttgtttgggactcacgatcctgcacaaatttgggaaaaacctggcttta
cctggaggtcaaggcttatctgggatggtactccaaggtcttgtcaaaaagatggtgcag
tggtttgagaaagcaaggatgttgtggatcgaggcatgcacacagaggaatgagaccttg
ctgaacctagctgaagacttatttgactctgtaatggttgttcatgaaacaagtctagag
ggaacatatcaggtcactgaatgctttctacatctcattggccagctggctgcagaccca
agaatccacataatgatccagaaagaggctattcggaaactgaacatcattctggataag
atcccagcggagctcaaaaaggagaagaagatcttatcgtctcaagaggcctcggatcta
atgaacaacctggccagtcgaattgtagaaggtggagattatgacctgcagatagccttg
atggaagccctgtgcaggatgaccacccgtgcccagaggaaggagctggctgacgactgg
ttctccatggagtttgttgctagcaccttcagcaaaattcaggactctgagtttgagacg
gactgccgcaggtttctaaaccttttgaatgggatgcagggagatgggagaagagtgttc
tcctacccttgtctggaggtgtttctagacaaacatgagttgctgatgcccgctgatgag
aaactggaggagttctggatcgacttcaacctgggaagtcagagcgtctccttctacttc
tctcttgccgatgaggatgcacaggagggtcagtgggacacagcctgtatccctgagaat
gaagtccacagttacacggtcacagaggagggtaggaggagggtgctgaagttaaagctg
acagagccgttgtgtgtgagtggggtggagggctcccacctcaccatccacttcagctct
tccctggacatcatgcaggcagccaggagcgtctacggaaacaagaacaaatcgtttgtg
ggcaagagaagaacctctgttgtgaagaccacagtcaagattgttatggatgacaactgc
tcccaggctcttgttcccgagagtcagatgtcccccgacgctgacatggagagagagagg
gacagtgtcccctgtctgctaccccctcgcccctctggacccttacagatggtgactcca
gccaagaggagggtgtctgagtccagcacgttcatcaccagcagcggaggagggaggggg
acaggagccagcccctttagcgttgttatggcagcatccactcccagaggcagcaggccc
aaagtgaagccggctatagagctggtcaggtcgtgtgagaggcaaggccagtcgggcctg
ggggagctgaggacggccaaaccccactacaacgccgcccctggcattacactgagccac
agcaggagcgagcagatggatgcggtggttgctctatcacagagcaaagctaccaagcag
gacaccagagctggacctgtggcagagaaataccgcaggcacatcccagtggacaaagtg
gtggagatggtccaaactgaccaggcagaggaagaggagcttcttgacagcagcattgtc
cctgactcccagcctaccatgaaaacagagagtactatattctcccactggaggaaagtg
tctgtatctgagatgctgctgccggtacagagaggcttccagaaggcactgcccaaacca
gaacttgagaacgtagagcaacaggagcgtccgtcgtctgcccagagaggttctgggtcg
gtccctgggtcagcagtcagccacaagcagctccacgcccagctcacccagcgcctggag
gaggtcctccgcaagagggaccggggtactgggcccgaggagcgagctggagtccagatc
agagtgcctgaggagcgaggtgggccacaggaccgagggtcccgagagcgagctggagcc
cagggaggaagcgggcctgaggagcaaagtggagcccagggaggaagagggcctgaggag
caagatggagcccggggaggaagagggcctgaggagcgaggtgagcccactgggagaggt
gccaaagtgtcacggcaggatgcaggaaggcctggtcagaccaaggggaaacctaagagc
cagaagtctcaggaaactgaagccaccccagggaaagcccctgtcaaacccaccccagct
aaagatatacaggagagggcaacacctaactccaaggttaaggccactgggtcaaactcc
agtaaagacaagagagaggaggtggtgacgggcaccatgatgaggttaatctccagccac
tacgagaatagcacatcatccaccaccattaaatcccctgtagagtctgtccctcgctgg
ccccttccacccaccaacagatctgttttggagaagagttggttgccgccatcgatggtg
ggaacggcaaaagcccaaggatatatgaagtcctacactaactccaagaagccctctgca
gaacaacaaggagatgacgtctttgcgttcaaagtggatacatctatgaccactgggggg
gaggggaaaatgtcctcggacacctctgccattgatagcagtgctactcacaactcctgg
gcattccccagcactgccaagaagggccaagcagtcaagtcccaggtagcagctcagcgg
cgccacgtgaagaagcacctgttcagcgacacagacacagacgccatgatggagatcagc
tggctcaaagagtccagcaggaagcccaagcccaaagtgatcgactacagccgtcagccc
cggctccacccccctgcccccaacaccacatatgagtccccagacttaccacctagctca
cccaagcctgtgaaggagaaagccaagccaaagaagaagagacagagggtgaaggagaga
agtgtagagcagaaagagaacagtggagcggcactggtggcggcagggaccagtcaagca
gccaggaggccccagagagccgccgccaccaacgccaagagctacagggagcccgacagc
gccagccaatcagagactgaagagccgccagctcctaagaagcgctccatcggaccagcg
gaaaagatcgaaaaggtttgccaagaggctgtcgaggtgaagaagaaaaaggcaaccacc
ccggccaaggaacagacgaatgtaccgaaagagtcttcttgggctgcccggctggcctct
ttcaaaccttccccgcctgccatcgagaggatgagagctgcatccgagaggtcgctgata
gccttaccccggtcgctcctcacccctctgggctccctgtccgcctcccctgccagcggc
ccctcttcaccccttgccctggagctgccccccgaacaccctcgcagcagcgcgggcttc
caaccctcctccttctacagcgcccctgggaggaagagtgaccgcaaagctaaggatccc
tctctcccatccctcccctctttcccatcccttactcccactggcaagactcctggcctc
cgcgcccagagacccagtgccttagagctgagcccaatccagcctgctctctccccggcc
cagtcacccctcctctgccctccctcccagctcctcttgacctccacggccctccagaag
tcagtgctgccctcccctctactccaatcacagccctctccaggagagactgatcaattc
gccctccattttggcttcccgggccagctgggcctgcccgagtccttcgacaaggagtca
cttgtctccagagtgaagttgagccagtcctcgtccaggtcagagatgtcatcgacccga
gtggaggcggtcaacccggtagccctgacaaccgcactggagaaaaccccatactctgag
cgaaggcacaagttggatcaacgcagctttcacctgtcaggtccctgcaccgggcgcaag
cgccacaactcccgcccctcgtccagtaactcggaggaggagggaaagagcggcacacga
agagggaggcaggcggtcaagatgaggcctagaaaactgtttaaacccacagccaagccc
aacctccacgctcaggcccaggcatgggaggaacagagcagctctgacgaagaggaggaa
gaggagaagaaaggaaatggaacaaaggacagggcctcgctggcaaccacgaaaatatat
caccacatccagagcagcaagagcgctcgtgacacagtcatggacgtttctccggagggg
gacctgagccgggtggtgtcgtcccacatggtgacgtcatccagctgggaggccgacgtg
gaggccgaggtggagggtgagctggatcgctcccctcacgacatgggcaacatgtgtcgc
cagttcagctccgagctccagaggaaattccagaatcgctccagacgtatggagctgtac
accaagcagtctctgaagaccgtccagcagcacgtctcttccatcagcatgagagttcaa
aactacaggtctcagaagctggaacaggtcaggggtgttctgctgaaggagatcaacaac
ttggaggaggacgaatccactctaaagaacatggagaaggaactgactacatactggagg
aagcagtctgtggctttccattcctaccaggagaaagagactagaagactgcagagcctc
aagagtaccttccagaccgatgtgtgtcacagcctggagtacgaggagaggatcttcacc
tctcagatgtgcctgatgaggaaagacatgaaatcagttcaggacagactcttcaaggaa
atgcaagacgaggagataatgagtgtgaggagaggactacaggctcttttcctgccagag
ggtccaagattttaa
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