Oncorhynchus tshawytscha (Chinook salmon): 112215968
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Entry
112215968 CDS
T05605
Name
(RefSeq) E3 ubiquitin-protein ligase NRDP1
KO
K11981
E3 ubiquitin-protein ligase NRDP1 [EC:
2.3.2.27
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
112215968
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112215968
04121 Ubiquitin system [BR:
otw04121
]
112215968
03029 Mitochondrial biogenesis [BR:
otw03029
]
112215968
Enzymes [BR:
otw01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
112215968
Membrane trafficking [BR:
otw04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
112215968
Autophagy
Mitophagy
PINK1-Parkin associated proteins
112215968
Ubiquitin system [BR:
otw04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
112215968
Mitochondrial biogenesis [BR:
otw03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
112215968
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
USP8_interact
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-rbx1
zf-RING_6
zf-Nse
zf-C3HC4_4
zf-RING_UBOX
zf-C3HC4_3
zf-RING_5
U-box
Sina_ZnF
zf-ANAPC11
zf-RING_10
zf-TRAF
LXG
Bacillus_HBL
Sos7
DUF641
zf-RING_16
zf-TRAF_2
BLOC1_2
SlyX
Motif
Other DBs
NCBI-GeneID:
112215968
NCBI-ProteinID:
XP_024231268
LinkDB
All DBs
Position
LG02:38794245..38821490
Genome browser
AA seq
318 aa
AA seq
DB search
MGYDVTRFQGEVDEDLLCPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQICPVDRSVV
TLAHLRPVPRIMRNMLSKLQINCDNAGFGCVAMLRLDQLQSHLRDCQHNPKRPVQCEQGC
GLEMPKDEASSHNCIKHLRSVVQQQQGKIADLEKASAEHKHQLAEQKRDIQLLKAYMRAI
RSANPNLQNLEDTIEYNEILEWVNSLQPARVTRWGGMISTPDAVLQAVIKRSLIDSGCPP
SIVNDLIENAHERNWPAGLATLETRQMNRRYYENYVAKRIPGKQAVVVMACENQHMGEDM
ILEPGLVMIFAHGVEEIL
NT seq
957 nt
NT seq
+upstream
nt +downstream
nt
atgggctacgacgtcacccggttccagggggaagtggatgaggacctgctgtgccccatc
tgcagtggagtcctagaggagcccgttcaggcccctcactgtgagcacgccttctgcaat
gcctgcatcacccagtggttctcgcagcagcagatatgccccgtggaccgcagcgtggtg
acgctggcccacctgcgtcccgtgccccgcatcatgcgcaacatgctctccaagctgcaa
atcaactgcgacaacgctggctttggctgcgttgccatgctgcgcctggaccagctgcag
tctcacctcagggactgccagcacaaccccaagaggcccgtccagtgtgagcagggctgc
ggtctggagatgcctaaagatgaggcgtctagccataactgcatcaaacacctgcgcagc
gtggtgcagcaacagcagggcaagatcgcagacctggagaaggcctctgctgaacacaag
caccagctagcggagcagaaacgggacatccagttactgaaggcgtacatgagggccatc
cgcagtgccaaccccaacttgcagaacctggaggacaccattgagtacaatgagatcctg
gagtgggtgaactccctccagccggctcgggtcacccgctggggcggcatgatctcaacg
ccagacgctgtcctccaggcggtcatcaaacgctcgctcatcgacagcggctgcccgcct
tccatcgtcaacgaccttatcgagaatgcccacgagaggaactggcccgccggcctggcc
acgctggaaacgcggcagatgaaccggcgctactatgagaattacgtggccaagcgtatc
ccagggaaacaggcggtggtggtgatggcctgtgagaaccagcatatgggggaggacatg
atcctggagccaggcctggtcatgatctttgcccatggggtggaggagatactatga
DBGET
integrated database retrieval system
