Oncorhynchus tshawytscha (Chinook salmon): 112216087
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Entry
112216087 CDS
T05605
Symbol
nelfcd
Name
(RefSeq) negative elongation factor C/D isoform X1
KO
K15181
negative elongation factor C/D
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
112216087 (nelfcd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
otw03021
]
112216087 (nelfcd)
Transcription machinery [BR:
otw03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
NELF complex
112216087 (nelfcd)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TH1
DUF4817
Motif
Other DBs
NCBI-GeneID:
112216087
NCBI-ProteinID:
XP_024231539
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All DBs
Position
LG02:complement(38491779..38497745)
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AA seq
579 aa
AA seq
DB search
MDEEYYERNIGDWDGPDGNQDDYVEGENDGKVQEDCLQKFSSRDYIMEPAVFNTLKTYFQ
AGGSPEHVIQLLSENYSAVAQTVNLLAEWLIQMGVEPAQVQERVENHLKSLLIKHFDPQK
ADSIFTVEGETPAWLEQMIAHTTWRDLFYKLAEAHPDCLMLNFTVKLISDAGYQGEITSV
STACQQLEVFSRVLRTSLATLLDGGEDNLEKNLPEFAKMVCHGEHTYLFAQAMMSIMSQE
EQGGSAMRRIGQEVQKSAHQRGHDASQITLALGTAAAYPRACQALGAMLSKGALNPADIT
VLFKMFSSMDPPPVELIRVPAFLDLFMQSLFKPGSKINQDHKHKYIHILAYAASVVETWK
KNKRVNINKDELKSTSKAIETVHNLCCNENKGATELVAELSTLYQCIRFPVVAMGVLKWV
DWTVSEPRYFQLQTDHTPVHLALLDEISTCHQLLHPQVLHLLIKLFETEHSQLDVMEQME
LKKTLLDRMVHLLSRGYVLPVVGYIRKCLEKLNTDISLIRYFVTEVLDVIAPPYTSDFVQ
LFLPILENDSIAGTIRTEGEHDPVAEFIAHCKSNFIMMN
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atggacgaggaatattacgaaaggaatattggagactgggatggtccggatggaaatcag
gacgactatgttgaaggggagaacgatgggaaagttcaggaggactgcctacagaagttc
tccagcagagattacatcatggagcctgctgtcttcaacaccctcaaaacatatttccag
gctggtggctcccctgaacatgtcatccagctcctgtcggagaactactctgctgtggca
cagactgtcaacctgctggcagagtggctcatccagatgggtgtagagcctgctcaggtg
caggagcgggtagagaatcacttgaaaagtctcctgatcaagcactttgacccccagaag
gcagactccatttttactgtagagggagagactcctgcctggctggaacagatgatcgcc
cacaccacctggagagaccttttctacaagctggccgaggcccaccctgactgtctgatg
ctcaacttcactgtcaaactcatctcagatgcgggctaccagggggagatcaccagtgtg
tcgacagcgtgccagcagctggaggtgttctccagggtcctaaggacctctctggccacg
ctgctggatggaggagaggacaacctagagaagaacctgccagaattcgctaagatggtg
tgtcacggggagcacacatacctgtttgcccaggccatgatgtccatcatgtctcaggag
gagcagggggggtcggccatgcgcaggatcggccaggaagtacagaagtctgcacatcaa
cggggccatgatgccagtcagataactctggcattgggcacagcagcagcctaccctcga
gcctgccaggccctgggcgcaatgctgtccaaaggggcactcaaccctgccgacatcact
gtgctcttcaagatgttcagcagcatggacccacctcccgtagagctgatccgagtgcct
gcgttcctcgacctgttcatgcagtcgctgttcaagccgggctcaaagatcaaccaggac
cataaacacaaatacattcacatcctggcctatgctgccagtgtggttgaaacatggaaa
aagaacaagcgagtgaacatcaacaaggacgagcttaaatccacctccaaggccattgag
acggtccataacctgtgttgcaatgagaataaaggagccacagaactggtggctgagctc
agcaccctgtaccagtgcatccgattcccagttgttgccatgggggtactgaagtgggtt
gattggacggtctctgagccccgctacttccagctccagacagaccacacccctgtccac
ctggcacttctggacgagatcagcacctgtcaccagcttctgcacccacaggtcctccat
ctactgatcaagctctttgagaccgaacactcccagctcgacgtcatggagcagatggaa
ctgaagaagaccctgttggaccgtatggtccacctgctgagtcgaggctacgtgctgcct
gtggtcggatacatccgcaagtgcctggagaagctcaacacagacatctctctcatccgc
tactttgtaacggaggtgttggatgtgattgcccctccgtacacgtcagactttgtccag
ctgttcctgcccatcctggagaacgacagcatcgctggcacaatacgcacagagggagaa
cacgatcctgtggctgagtttatagctcactgcaaatccaacttcatcatgatgaactga
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